Surveillance of respiratory viruses by aerosol screening in indoor air as an early warning system for epidemics

IF 3.6 4区 生物学 Q2 ENVIRONMENTAL SCIENCES
Zeynep Bengi Eren, Cansel Vatansever, Berk Kabadayı, Bedirhan Haykar, Zeynep Ece Kuloğlu, Sedat Ay, Kamila Nurlybayeva, Gül Eyikudamacı, Tayfun Barlas, Erhan Palaoğlu, Yeşim Beşli, Mert Ahmet Kuşkucu, Önder Ergönül, Fusun Can
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Abstract

The development of effective methods for the surveillance of seasonal respiratory viruses is required for the timely management of outbreaks. We aimed to survey Influenza-A, Influenza-B, RSV-A, Rhinovirus and SARS-CoV-2 surveillance in a tertiary hospital and a campus over 5 months. The effectiveness of air screening as an early warning system for respiratory viruses was evaluated in correlation with respiratory tract panel test results. The overall viral positivity was higher on the campus than in the hospital (55.0% vs. 38.0%). Influenza A was the most prevalent pathogen in both locations. There were two influenza peaks (42nd and 49th weeks) in the hospital air, and a delayed peak was detected on campus in the 1st-week of January. Panel tests indicated a high rate of Influenza A in late December. RSV-A-positivity was higher on the campus than the hospital (21.6% vs. 7.4%). Moreover, we detected two RSV-A peaks in the campus air (48th and 51st weeks) but only one peak in the hospital and panel tests (week 49). Although rhinovirus was the most common pathogen in panel tests, rhinovirus positivity was low in air samples. The air screening for Influenza-B and SARS-Cov-2 revealed comparable positivity rates with panel tests. Air screening can be integrated into surveillance programs to support infection control programs for potential epidemics of respiratory virus infections except for rhinoviruses.

Abstract Image

通过室内空气中的气溶胶筛查监测呼吸道病毒,作为流行病的预警系统。
为了及时处理疫情爆发,需要开发有效的季节性呼吸道病毒监测方法。我们的目的是调查一家三甲医院和一个校园在 5 个月内对甲型流感、乙型流感、RSV-A、鼻病毒和 SARS-CoV-2 的监测情况。空气筛查作为呼吸道病毒预警系统的有效性与呼吸道全套检测结果进行了相关评估。校园的总体病毒阳性率高于医院(55.0% 对 38.0%)。甲型流感是两地最常见的病原体。医院的空气中出现了两个流感高峰(第 42 周和第 49 周),而校园内则在 1 月份的第 1 周发现了一个延迟高峰。小组检测显示,12 月下旬的甲型流感发病率较高。校园的 RSV-A 阳性率高于医院(21.6% 对 7.4%)。此外,我们在校园空气中检测到两个 RSV-A 峰值(第 48 周和第 51 周),但在医院和小组检测中只有一个峰值(第 49 周)。虽然鼻病毒是小组检测中最常见的病原体,但鼻病毒在空气样本中的阳性率很低。对乙型流感和 SARS-Cov-2 的空气筛查结果显示,阳性率与小组检测结果相当。空气筛查可纳入监测计划,为潜在的呼吸道病毒感染流行病(鼻病毒除外)的感染控制计划提供支持。
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来源期刊
Environmental Microbiology Reports
Environmental Microbiology Reports ENVIRONMENTAL SCIENCES-MICROBIOLOGY
CiteScore
6.00
自引率
3.00%
发文量
91
审稿时长
3.0 months
期刊介绍: The journal is identical in scope to Environmental Microbiology, shares the same editorial team and submission site, and will apply the same high level acceptance criteria. The two journals will be mutually supportive and evolve side-by-side. Environmental Microbiology Reports provides a high profile vehicle for publication of the most innovative, original and rigorous research in the field. The scope of the Journal encompasses the diversity of current research on microbial processes in the environment, microbial communities, interactions and evolution and includes, but is not limited to, the following: the structure, activities and communal behaviour of microbial communities microbial community genetics and evolutionary processes microbial symbioses, microbial interactions and interactions with plants, animals and abiotic factors microbes in the tree of life, microbial diversification and evolution population biology and clonal structure microbial metabolic and structural diversity microbial physiology, growth and survival microbes and surfaces, adhesion and biofouling responses to environmental signals and stress factors modelling and theory development pollution microbiology extremophiles and life in extreme and unusual little-explored habitats element cycles and biogeochemical processes, primary and secondary production microbes in a changing world, microbially-influenced global changes evolution and diversity of archaeal and bacterial viruses new technological developments in microbial ecology and evolution, in particular for the study of activities of microbial communities, non-culturable microorganisms and emerging pathogens.
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