The State-of-the-Art Overview to Application of Deep Learning in Accurate Protein Design and Structure Prediction

IF 8.6 2区 化学 Q1 Chemistry
Saber Saharkhiz, Mehrnaz Mostafavi, Amin Birashk, Shiva Karimian, Shayan Khalilollah, Sohrab Jaferian, Yalda Yazdani, Iraj Alipourfard, Yun Suk Huh, Marzieh Ramezani Farani, Reza Akhavan-Sigari
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Abstract

In recent years, there has been a notable increase in the scientific community's interest in rational protein design. The prospect of designing an amino acid sequence that can reliably fold into a desired three-dimensional structure and exhibit the intended function is captivating. However, a major challenge in this endeavor lies in accurately predicting the resulting protein structure. The exponential growth of protein databases has fueled the advancement of the field, while newly developed algorithms have pushed the boundaries of what was previously achievable in structure prediction. In particular, using deep learning methods instead of brute force approaches has emerged as a faster and more accurate strategy. These deep-learning techniques leverage the vast amount of data available in protein databases to extract meaningful patterns and predict protein structures with improved precision. In this article, we explore the recent developments in the field of protein structure prediction. We delve into the newly developed methods that leverage deep learning approaches, highlighting their significance and potential for advancing our understanding of protein design.

Abstract Image

深度学习在精确蛋白质设计和结构预测中的应用现状概述。
近年来,科学界对合理蛋白质设计的兴趣明显增加。设计出一种能可靠折叠成所需三维结构并展现预期功能的氨基酸序列的前景令人着迷。然而,这项工作的一大挑战在于如何准确预测最终的蛋白质结构。蛋白质数据库的指数级增长推动了这一领域的进步,而新开发的算法则突破了以往结构预测的极限。其中,使用深度学习方法而非蛮力方法已成为一种更快、更准确的策略。这些深度学习技术利用蛋白质数据库中的海量数据提取有意义的模式,并以更高的精度预测蛋白质结构。在本文中,我们将探讨蛋白质结构预测领域的最新进展。我们深入探讨了利用深度学习方法新开发的方法,强调了这些方法在推进我们对蛋白质设计的理解方面的意义和潜力。
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来源期刊
Topics in Current Chemistry
Topics in Current Chemistry 化学-化学综合
CiteScore
11.70
自引率
1.20%
发文量
0
审稿时长
6-12 weeks
期刊介绍: Topics in Current Chemistry provides in-depth analyses and forward-thinking perspectives on the latest advancements in chemical research. This renowned journal encompasses various domains within chemical science and their intersections with biology, medicine, physics, and materials science. Each collection within the journal aims to offer a comprehensive understanding, accessible to both academic and industrial readers, of emerging research in an area that captivates a broader scientific community. In essence, Topics in Current Chemistry illuminates cutting-edge chemical research, fosters interdisciplinary collaboration, and facilitates knowledge-sharing among diverse scientific audiences.
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