Detecting drug-resistant human cytomegalovirus mutations in liver transplant recipients: A study of the UL97 gene

IF 1 Q4 GENETICS & HEREDITY
Leila Jalilsani , Ramin Yaghobi , Bita Geramizadeh , Afsoon Afshari , Mohammad Hossein Karimi
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Abstract

Human cytomegalovirus (HCMV or HHV-5) is a member of the beta herpesvirus family and remains dormant for life after the initial infection. However, if conditions such as immunosuppression occur, the virus can become active again and lead to severe diseases. The incidence of disease in solid organ transplant (SOT) recipients is reduced by prophylactic use of ganciclovir (either intravenously or orally). This study aimed to determine the pattern of clinical mutations associated with the cytomegalovirus UL97 gene after treatment with ganciclovir and the effect of these mutations on disease progression in liver transplant recipients infected with Iranian HCMV strains. Six HCMV-positive liver transplant recipients were enrolled, comprising 3 (50.0 %) males and 3 (50.0 %) females. Sequence analysis and mutation detection were performed using Finch software (version 1.4.0) and the NCBI Nucleotide Blast database, whereas phylogenetic analysis was performed using MEGA X (version 10.0.5). Mann-Whitney U nonparametric test, Chi-square test, Spearman's correlation coefficient analysis, were employed for statistical analysis. The results of the study showed that two samples from two patients had mutations in the UL97 gene, and the viral load of the mutated samples decreased after administering antiviral medications. Furthermore, the phylogenetic tree demonstrated a close relationship between the Iranian HCMV strains and global reference sequences.

检测肝移植受者的抗药性人类巨细胞病毒变异:对 UL97 基因的研究
人类巨细胞病毒(HCMV 或 HHV-5)是乙型疱疹病毒家族的一员,初次感染后终身处于休眠状态。但是,如果出现免疫抑制等情况,病毒就会再次活跃起来,导致严重的疾病。预防性使用更昔洛韦(静脉注射或口服)可降低实体器官移植(SOT)受者的发病率。本研究旨在确定使用更昔洛韦治疗后巨细胞病毒 UL97 基因相关临床突变的模式,以及这些突变对感染伊朗 HCMV 株系的肝移植受者疾病进展的影响。该研究共招募了六名 HCMV 阳性肝移植受者,其中男性三人(50.0%),女性三人(50.0%)。使用 Finch 软件(1.4.0 版)和 NCBI 核苷酸 Blast 数据库进行序列分析和突变检测,并使用 MEGA X(10.0.5 版)进行系统发育分析。统计分析采用了 Mann-Whitney U 非参数检验、Chi-square 检验和 Spearman 相关系数分析。研究结果表明,两名患者的两个样本存在 UL97 基因突变,在服用抗病毒药物后,突变样本的病毒载量有所下降。此外,系统发生树显示伊朗 HCMV 株系与全球参考序列关系密切。
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来源期刊
Gene Reports
Gene Reports Biochemistry, Genetics and Molecular Biology-Genetics
CiteScore
3.30
自引率
7.70%
发文量
246
审稿时长
49 days
期刊介绍: Gene Reports publishes papers that focus on the regulation, expression, function and evolution of genes in all biological contexts, including all prokaryotic and eukaryotic organisms, as well as viruses. Gene Reports strives to be a very diverse journal and topics in all fields will be considered for publication. Although not limited to the following, some general topics include: DNA Organization, Replication & Evolution -Focus on genomic DNA (chromosomal organization, comparative genomics, DNA replication, DNA repair, mobile DNA, mitochondrial DNA, chloroplast DNA). Expression & Function - Focus on functional RNAs (microRNAs, tRNAs, rRNAs, mRNA splicing, alternative polyadenylation) Regulation - Focus on processes that mediate gene-read out (epigenetics, chromatin, histone code, transcription, translation, protein degradation). Cell Signaling - Focus on mechanisms that control information flow into the nucleus to control gene expression (kinase and phosphatase pathways controlled by extra-cellular ligands, Wnt, Notch, TGFbeta/BMPs, FGFs, IGFs etc.) Profiling of gene expression and genetic variation - Focus on high throughput approaches (e.g., DeepSeq, ChIP-Seq, Affymetrix microarrays, proteomics) that define gene regulatory circuitry, molecular pathways and protein/protein networks. Genetics - Focus on development in model organisms (e.g., mouse, frog, fruit fly, worm), human genetic variation, population genetics, as well as agricultural and veterinary genetics. Molecular Pathology & Regenerative Medicine - Focus on the deregulation of molecular processes in human diseases and mechanisms supporting regeneration of tissues through pluripotent or multipotent stem cells.
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