{"title":"climetrics: an R package to quantify multiple dimensions of climate change","authors":"Shirin Taheri, Babak Naimi, Miguel B. Araújo","doi":"10.1111/ecog.07176","DOIUrl":null,"url":null,"abstract":"<p>Climate change affects biodiversity in a variety of ways, necessitating the exploration of multiple climate dimensions using appropriate metrics. Despite the existence of several climate change metrics tools for comparing alternative climate change metrics on the same footing are lacking. To address this gap, we developed ‘climetrics' which is an extensible and reproducible R package to spatially quantify and explore multiple dimensions of climate change through a unified procedure. Six widely used climate change metrics are implemented, including 1) standardized local anomalies; 2) changes in probabilities of local climate extremes; 3) changes in areas of analogous climates; 4) novel climates; 5) changes in distances to analogous climates; and 6) climate change velocity. For climate change velocity, three different algorithms are implemented in the package including; 1) distanced-based velocity (‘<i>dVe</i>'); 2) threshold-based velocity (‘<i>ve</i>'); and 3) gradient-based velocity (‘<i>gVe</i>'). The package also provides additional tools to calculate the monthly mean of climate variables over multiple years, to quantify and map the temporal trend (slope) of a given climate variable at the pixel level, and to classify and map Köppen-Geiger (KG) climate zones. The 'climetrics' R package is integrated with the 'rts' package for efficient handling of raster time-series data. The functions in 'climetrics' are designed to be user-friendly, making them suitable for less-experienced R users. Detailed descriptions in help pages and vignettes of the package facilitate further customization by advanced users. In summary, the 'climetrics' R package offers a unified framework for quantifying various climate change metrics, making it a useful tool for characterizing multiple dimensions of climate change and exploring their spatiotemporal patterns.</p>","PeriodicalId":51026,"journal":{"name":"Ecography","volume":"2024 8","pages":""},"PeriodicalIF":5.4000,"publicationDate":"2024-06-25","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://onlinelibrary.wiley.com/doi/epdf/10.1111/ecog.07176","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"Ecography","FirstCategoryId":"93","ListUrlMain":"https://onlinelibrary.wiley.com/doi/10.1111/ecog.07176","RegionNum":1,"RegionCategory":"环境科学与生态学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q1","JCRName":"BIODIVERSITY CONSERVATION","Score":null,"Total":0}
引用次数: 0
Abstract
Climate change affects biodiversity in a variety of ways, necessitating the exploration of multiple climate dimensions using appropriate metrics. Despite the existence of several climate change metrics tools for comparing alternative climate change metrics on the same footing are lacking. To address this gap, we developed ‘climetrics' which is an extensible and reproducible R package to spatially quantify and explore multiple dimensions of climate change through a unified procedure. Six widely used climate change metrics are implemented, including 1) standardized local anomalies; 2) changes in probabilities of local climate extremes; 3) changes in areas of analogous climates; 4) novel climates; 5) changes in distances to analogous climates; and 6) climate change velocity. For climate change velocity, three different algorithms are implemented in the package including; 1) distanced-based velocity (‘dVe'); 2) threshold-based velocity (‘ve'); and 3) gradient-based velocity (‘gVe'). The package also provides additional tools to calculate the monthly mean of climate variables over multiple years, to quantify and map the temporal trend (slope) of a given climate variable at the pixel level, and to classify and map Köppen-Geiger (KG) climate zones. The 'climetrics' R package is integrated with the 'rts' package for efficient handling of raster time-series data. The functions in 'climetrics' are designed to be user-friendly, making them suitable for less-experienced R users. Detailed descriptions in help pages and vignettes of the package facilitate further customization by advanced users. In summary, the 'climetrics' R package offers a unified framework for quantifying various climate change metrics, making it a useful tool for characterizing multiple dimensions of climate change and exploring their spatiotemporal patterns.
期刊介绍:
ECOGRAPHY publishes exciting, novel, and important articles that significantly advance understanding of ecological or biodiversity patterns in space or time. Papers focusing on conservation or restoration are welcomed, provided they are anchored in ecological theory and convey a general message that goes beyond a single case study. We encourage papers that seek advancing the field through the development and testing of theory or methodology, or by proposing new tools for analysis or interpretation of ecological phenomena. Manuscripts are expected to address general principles in ecology, though they may do so using a specific model system if they adequately frame the problem relative to a generalized ecological question or problem.
Purely descriptive papers are considered only if breaking new ground and/or describing patterns seldom explored. Studies focused on a single species or single location are generally discouraged unless they make a significant contribution to advancing general theory or understanding of biodiversity patterns and processes. Manuscripts merely confirming or marginally extending results of previous work are unlikely to be considered in Ecography.
Papers are judged by virtue of their originality, appeal to general interest, and their contribution to new developments in studies of spatial and temporal ecological patterns. There are no biases with regard to taxon, biome, or biogeographical area.