{"title":"Impact of interleukin-1 gene polymorphisms on the severity of COVID-19","authors":"Shrikant Verma , Sushma Verma , Sheeba Afreen , Zeba Siddiqi , Faizan Haider Khan , Mohammad Abbas , Farzana Mahdi","doi":"10.1016/j.humgen.2024.201303","DOIUrl":null,"url":null,"abstract":"<div><p>The severity of Coronavirus Disease 2019 (COVID-19) has been closely linked to an exacerbated proinflammatory response and cytokine storm. Interleukin-1 (IL-1), a pivotal proinflammatory cytokine, plays a crucial role in the development of acute respiratory distress syndrome (ARDS) and multiorgan dysfunction. Single nucleotide polymorphisms within the <em>IL-1</em> gene have been shown to modulate IL-1 cytokine levels. This study aimed to investigate the association of <em>IL-1</em> gene polymorphisms (<em>IL-1</em> + 3953C > T, <em>IL-1β</em> -511 T > C, and IL-1Ra) with the severity of COVID-19. Genotyping of <em>IL-1</em> gene polymorphisms (<em>IL-1</em> + 3953C > T, <em>IL-1β</em> -511 T > C) were performed by polymerase chain reaction-restriction fragment length polymorphism (PCR-RFLP), while <em>IL-1Ra</em> genotyping was done by Random Amplification of Polymorphic DNA (RAPD). PCR-RFLP data were validated through Sanger sequencing (SeqStudio Genetic Analyzer). Data analysis was carried out by SPSS-v21 and SHesis (online version). The frequency of the T allele of the <em>IL-1</em> + 3953C > T polymorphism was found to be higher in mild cases as compared to severe cases, demonstrating a significant protective effect against COVID-19 severity (<em>P</em> = 0.001). However, no significant associations were observed for <em>IL-1β</em> -511 T > C and <em>IL-1Ra</em> polymorphisms (<em>P</em> > 0.05). In haplotype analysis (between <em>IL-1</em> + 3953C > T, and <em>IL-1β</em> -511 T > C gene polymorphisms), individual with CT haplotype showed a higher risk of severity (OR = 1.8, <em>P</em> = 0.001), while individuals with TT haplotype showed significant protection against severity (P = 0.001). Our findings suggest that the T allele of <em>IL-1β</em> + 3953C > T polymorphism may confer protective effect against the severity of COVID-19.</p></div>","PeriodicalId":29686,"journal":{"name":"Human Gene","volume":"41 ","pages":"Article 201303"},"PeriodicalIF":0.5000,"publicationDate":"2024-06-13","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"Human Gene","FirstCategoryId":"1085","ListUrlMain":"https://www.sciencedirect.com/science/article/pii/S2773044124000470","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q4","JCRName":"GENETICS & HEREDITY","Score":null,"Total":0}
引用次数: 0
Abstract
The severity of Coronavirus Disease 2019 (COVID-19) has been closely linked to an exacerbated proinflammatory response and cytokine storm. Interleukin-1 (IL-1), a pivotal proinflammatory cytokine, plays a crucial role in the development of acute respiratory distress syndrome (ARDS) and multiorgan dysfunction. Single nucleotide polymorphisms within the IL-1 gene have been shown to modulate IL-1 cytokine levels. This study aimed to investigate the association of IL-1 gene polymorphisms (IL-1 + 3953C > T, IL-1β -511 T > C, and IL-1Ra) with the severity of COVID-19. Genotyping of IL-1 gene polymorphisms (IL-1 + 3953C > T, IL-1β -511 T > C) were performed by polymerase chain reaction-restriction fragment length polymorphism (PCR-RFLP), while IL-1Ra genotyping was done by Random Amplification of Polymorphic DNA (RAPD). PCR-RFLP data were validated through Sanger sequencing (SeqStudio Genetic Analyzer). Data analysis was carried out by SPSS-v21 and SHesis (online version). The frequency of the T allele of the IL-1 + 3953C > T polymorphism was found to be higher in mild cases as compared to severe cases, demonstrating a significant protective effect against COVID-19 severity (P = 0.001). However, no significant associations were observed for IL-1β -511 T > C and IL-1Ra polymorphisms (P > 0.05). In haplotype analysis (between IL-1 + 3953C > T, and IL-1β -511 T > C gene polymorphisms), individual with CT haplotype showed a higher risk of severity (OR = 1.8, P = 0.001), while individuals with TT haplotype showed significant protection against severity (P = 0.001). Our findings suggest that the T allele of IL-1β + 3953C > T polymorphism may confer protective effect against the severity of COVID-19.