Fatemeh S. Hosseininasab, Hamid R. Memarian, Hadi Amiri Rudbari, Olivier Blacque
{"title":"A comparative study of X-ray structural analysis, DFT computations, and Hirshfeld surface analysis for decahydroacridine-1,8-diones","authors":"Fatemeh S. Hosseininasab, Hamid R. Memarian, Hadi Amiri Rudbari, Olivier Blacque","doi":"10.1007/s13738-024-03045-3","DOIUrl":null,"url":null,"abstract":"<div><p>Crystal structure analysis and DFT computational calculation of two symmetrical and unsymmetrical decahydroacridine-1,8-diones (DHACs) were carried out to elucidate the effect of the aryl-substituted heterocyclic core in these compounds on the comparative bond lengths, bond, and dihedral angles. According to these findings, the central heterocyclic ring in these compounds is exhibited in the <i>pseudo-boat</i> conformation, in which the aryl substitution occupies the <i>pseudo-axial</i> position. Moreover, the fused outer rings were in the twisted half-chair conformation. The weak and strong inter- and intramolecular interactions between the suitable donor–acceptor positions (N‒H···O, C‒H···O, H‒N···H and C‒H···π of the C=C double bond) in symmetrical and enantiomeric pairs of unsymmetrical DHACs affect the orientation of the molecules in the crystal packing. The relative contributions of various intermolecular interactions in these compounds are evaluated using Hirshfeld surface analysis. The DFT calculations were performed to outline the optimized structure, molecular electrostatic potential (MEP), frontier molecular orbitals (FMOs), natural bond orbital (NBO) and to elucidate the effect of the space orientation of the attached aryl ring toward the heterocyclic ring on the total energy content of DHAC <b>2</b>. Additionally, MEP analysis in DHAC <b>2</b> revealed that the negative electrostatic potential is more concentrated around the O<sub>1</sub>-atom of the C<sub>1</sub>=O<sub>1</sub> double bond than the O<sub>2</sub>-atom of the C<sub>13</sub>=O<sub>2</sub> double bond. The results of the NBO analysis demonstrated that in the crystal packing of compounds <b>1</b> and <b>2</b> the strongest intermolecular interaction occurs from the LP(2)O<sub>2</sub> to σ*(N<sub>1</sub>–H) and LP(1)O<sub>1</sub> to σ*(N<sub>1</sub>‒H), respectively.</p></div>","PeriodicalId":676,"journal":{"name":"Journal of the Iranian Chemical Society","volume":"21 7","pages":"1997 - 2015"},"PeriodicalIF":2.2000,"publicationDate":"2024-06-04","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"Journal of the Iranian Chemical Society","FirstCategoryId":"92","ListUrlMain":"https://link.springer.com/article/10.1007/s13738-024-03045-3","RegionNum":4,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q3","JCRName":"CHEMISTRY, MULTIDISCIPLINARY","Score":null,"Total":0}
引用次数: 0
Abstract
Crystal structure analysis and DFT computational calculation of two symmetrical and unsymmetrical decahydroacridine-1,8-diones (DHACs) were carried out to elucidate the effect of the aryl-substituted heterocyclic core in these compounds on the comparative bond lengths, bond, and dihedral angles. According to these findings, the central heterocyclic ring in these compounds is exhibited in the pseudo-boat conformation, in which the aryl substitution occupies the pseudo-axial position. Moreover, the fused outer rings were in the twisted half-chair conformation. The weak and strong inter- and intramolecular interactions between the suitable donor–acceptor positions (N‒H···O, C‒H···O, H‒N···H and C‒H···π of the C=C double bond) in symmetrical and enantiomeric pairs of unsymmetrical DHACs affect the orientation of the molecules in the crystal packing. The relative contributions of various intermolecular interactions in these compounds are evaluated using Hirshfeld surface analysis. The DFT calculations were performed to outline the optimized structure, molecular electrostatic potential (MEP), frontier molecular orbitals (FMOs), natural bond orbital (NBO) and to elucidate the effect of the space orientation of the attached aryl ring toward the heterocyclic ring on the total energy content of DHAC 2. Additionally, MEP analysis in DHAC 2 revealed that the negative electrostatic potential is more concentrated around the O1-atom of the C1=O1 double bond than the O2-atom of the C13=O2 double bond. The results of the NBO analysis demonstrated that in the crystal packing of compounds 1 and 2 the strongest intermolecular interaction occurs from the LP(2)O2 to σ*(N1–H) and LP(1)O1 to σ*(N1‒H), respectively.
期刊介绍:
JICS is an international journal covering general fields of chemistry. JICS welcomes high quality original papers in English dealing with experimental, theoretical and applied research related to all branches of chemistry. These include the fields of analytical, inorganic, organic and physical chemistry as well as the chemical biology area. Review articles discussing specific areas of chemistry of current chemical or biological importance are also published. JICS ensures visibility of your research results to a worldwide audience in science. You are kindly invited to submit your manuscript to the Editor-in-Chief or Regional Editor. All contributions in the form of original papers or short communications will be peer reviewed and published free of charge after acceptance.