A real-time PCR assay for the detection and quantification of Fusobacterium necrophorum and Fusobacterium varium in ruminal contents of cattle*

IF 1.4 Q3 AGRICULTURE, DAIRY & ANIMAL SCIENCE
Alyssa Deters , Xiaorong Shi , Jianfa Bai , Qing Kang , Jacques Mathieu , T.G. Nagaraja
{"title":"A real-time PCR assay for the detection and quantification of Fusobacterium necrophorum and Fusobacterium varium in ruminal contents of cattle*","authors":"Alyssa Deters ,&nbsp;Xiaorong Shi ,&nbsp;Jianfa Bai ,&nbsp;Qing Kang ,&nbsp;Jacques Mathieu ,&nbsp;T.G. Nagaraja","doi":"10.15232/aas.2023-02507","DOIUrl":null,"url":null,"abstract":"<div><h3>Objectives</h3><p>Our objectives were to develop and vali- date a quantitative PCR assay for the detection and quantification of the 2 subspecies of <em>Fusobacterium nec- rophorum</em> (ssp. <em>necrophorum</em> and ssp. <em>funduliforme</em>) and a recently recognized species, <em>Fusobacterium varium</em>, in ruminal contents of cattle collected at slaughter.</p></div><div><h3>Materials and Methods</h3><p>A quantitative PCR assay with primers and probes designed to target <em>hgdA</em>, which encodes for 2-hydroxyglutaryl dehydratase, for <em>F. necroph- orum</em> (<em>hgdA</em>-<em>n</em>) and <em>F. varium</em> (<em>hgdA-v</em>), and the leukotox- in promotor region, <em>lktA</em>-<em>n</em> and <em>lktA</em>-<em>f</em>, for the 2 subspecies of <em>F. necrophorum</em> were developed and validated. A total of 345 ruminal fluid samples were collected in an abattoir immediately after slaughter, which included 181 (52.5%) samples from cattle with apparently healthy, nonabscessed livers and 164 (47.5%) from cattle with abscessed livers. Basal media with lactate or lysine as the major energy source and each with or without josamycin, vancomycin, and norfloxacin were used to enrich ruminal samples that were below the lower limit of quantification.</p></div><div><h3>Results and Discussion</h3><p>The ssp. <em>necrophorum</em> was quantified in 22% and 29% of samples from cattle with nonabscessed and abscessed livers, respectively. The ssp. <em>funduliforme</em> and <em>F. varium</em> were prevalent in almost all ruminal samples (98% to 100%) and were not different between cattle with or without abscessed livers. The mean concentrations of the 2 subspecies and <em>F. varium</em> were 10<sup>3</sup> to 10<sup>4</sup> cfu/mL and were not different between cattle with abscessed or nonabscessed livers.</p></div><div><h3>Implications and Applications</h3><p>A major finding of the study was that only a small proportion of the ruminal contents harbored the ssp. <em>necrophorum</em>, which suggested that it is not a normal member of the ruminal microbial community. In contrast, the ssp. <em>funduliforme</em> and <em>F. vari- um</em> were prevalent in all ruminal contents tested. Because <em>F. varium</em> is a pathogen, the question whether the species contributes to the development of liver abscesses needs to be investigated.</p></div>","PeriodicalId":8519,"journal":{"name":"Applied Animal Science","volume":null,"pages":null},"PeriodicalIF":1.4000,"publicationDate":"2024-06-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.sciencedirect.com/science/article/pii/S2590286524000491/pdf?md5=daad2811721ccb8c9c0cf322ff15762e&pid=1-s2.0-S2590286524000491-main.pdf","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"Applied Animal Science","FirstCategoryId":"1085","ListUrlMain":"https://www.sciencedirect.com/science/article/pii/S2590286524000491","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q3","JCRName":"AGRICULTURE, DAIRY & ANIMAL SCIENCE","Score":null,"Total":0}
引用次数: 0

Abstract

Objectives

Our objectives were to develop and vali- date a quantitative PCR assay for the detection and quantification of the 2 subspecies of Fusobacterium nec- rophorum (ssp. necrophorum and ssp. funduliforme) and a recently recognized species, Fusobacterium varium, in ruminal contents of cattle collected at slaughter.

Materials and Methods

A quantitative PCR assay with primers and probes designed to target hgdA, which encodes for 2-hydroxyglutaryl dehydratase, for F. necroph- orum (hgdA-n) and F. varium (hgdA-v), and the leukotox- in promotor region, lktA-n and lktA-f, for the 2 subspecies of F. necrophorum were developed and validated. A total of 345 ruminal fluid samples were collected in an abattoir immediately after slaughter, which included 181 (52.5%) samples from cattle with apparently healthy, nonabscessed livers and 164 (47.5%) from cattle with abscessed livers. Basal media with lactate or lysine as the major energy source and each with or without josamycin, vancomycin, and norfloxacin were used to enrich ruminal samples that were below the lower limit of quantification.

Results and Discussion

The ssp. necrophorum was quantified in 22% and 29% of samples from cattle with nonabscessed and abscessed livers, respectively. The ssp. funduliforme and F. varium were prevalent in almost all ruminal samples (98% to 100%) and were not different between cattle with or without abscessed livers. The mean concentrations of the 2 subspecies and F. varium were 103 to 104 cfu/mL and were not different between cattle with abscessed or nonabscessed livers.

Implications and Applications

A major finding of the study was that only a small proportion of the ruminal contents harbored the ssp. necrophorum, which suggested that it is not a normal member of the ruminal microbial community. In contrast, the ssp. funduliforme and F. vari- um were prevalent in all ruminal contents tested. Because F. varium is a pathogen, the question whether the species contributes to the development of liver abscesses needs to be investigated.

用于检测和定量牛瘤胃内容物中的坏死镰刀菌和变异镰刀菌的实时 PCR 分析法*
目的 我们的目的是开发和鉴定一种定量 PCR 检测方法,用于检测和定量屠宰时收集的牛瘤胃内容物中的坏死镰刀菌的 2 个亚种(ssp. necrophorum 和 ssp. funduliforme)以及最近被确认的一个物种 Fusobacterium varium。材料与方法针对F. necroph- orum(hgdA-n)和F. varium(hgdA-v)设计了编码2-羟基戊二酰脱水酶的hgdA引物和探针,针对F. necrophorum的2个亚种设计了白细胞毒素启动子区域lktA-n和lktA-f引物和探针,开发并验证了定量PCR检测方法。屠宰场在屠宰后立即收集了 345 份瘤胃液样本,其中 181 份(52.5%)来自肝脏明显健康、无脓肿的牛,164 份(47.5%)来自肝脏脓肿的牛。使用以乳酸盐或赖氨酸为主要能量来源的基础培养基,以及添加或不添加交沙霉素、万古霉素和诺氟沙星的培养基来富集定量下限以下的瘤胃样本。Funduliforme 和 F. varium 在几乎所有瘤胃样本中都普遍存在(98% 至 100%),并且在肝脏有无脓肿的牛中没有差异。2 个亚种和 F. varium 的平均浓度为 103 至 104 cfu/mL,在肝脏有脓肿或无脓肿的牛之间没有差异。与此相反,Funduliforme 和 F. vari- um 在所有检测的瘤胃内容物中都很普遍。由于F. varium是一种病原体,因此需要研究该物种是否会导致肝脓肿的发生。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
求助全文
约1分钟内获得全文 求助全文
来源期刊
Applied Animal Science
Applied Animal Science AGRICULTURE, DAIRY & ANIMAL SCIENCE-
CiteScore
3.00
自引率
6.70%
发文量
68
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
确定
请完成安全验证×
copy
已复制链接
快去分享给好友吧!
我知道了
右上角分享
点击右上角分享
0
联系我们:info@booksci.cn Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。 Copyright © 2023 布克学术 All rights reserved.
京ICP备2023020795号-1
ghs 京公网安备 11010802042870号
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术官方微信