Integrity of RNA in long-term-stored cervical liquid-based cytology samples: implications for biomarker research.

IF 2.2 4区 工程技术 Q3 BIOCHEMICAL RESEARCH METHODS
BioTechniques Pub Date : 2024-01-01 Epub Date: 2024-05-01 DOI:10.2144/btn-2023-0112
Madeleine P J White, Andrew Stevenson, Hana Elasifer, Chris Davies, Kyriaki Nomikou, Kate Cuschieri, Sheila V Graham
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引用次数: 0

Abstract

Biobanks of cervical screening (LBC) samples annotated with disease status are an invaluable resource to support the development of tools for the risk stratification of disease. Although there is growing interest in the assessment of RNA-based biomarkers, little is known on the suitability and durability of stored clinical samples (commonly used in cervical screening) to support RNA-based research. RNA was extracted from 260 stored LBC samples. Storage at -80°C or -25°C allowed isolation of sufficient RNA for further analysis. RNA was found to be substantially degraded according to Agilent Bioanalyser data. Despite this, RT-qPCR was successful in 95% samples tested. These data suggest that biobanked LBC samples are suitable for RNA-based assessment even if stored for up to 14 years.

长期储存的宫颈液基细胞学样本中 RNA 的完整性:对生物标记研究的影响。
注释疾病状态的宫颈筛查(LBC)样本生物库是支持疾病风险分层工具开发的宝贵资源。尽管人们对基于 RNA 的生物标记物的评估越来越感兴趣,但对储存的临床样本(常用于宫颈筛查)是否适合和耐用,是否能支持基于 RNA 的研究,却知之甚少。我们从 260 份储存的 LBC 样本中提取了 RNA。在-80°C或-25°C条件下保存,可分离出足够的RNA用于进一步分析。根据安捷伦生物分析仪的数据,发现 RNA 已严重降解。尽管如此,在 95% 的测试样本中,RT-qPCR 仍取得了成功。这些数据表明,生物库中的 LBC 样本即使保存长达 14 年,也适合进行基于 RNA 的评估。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
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来源期刊
BioTechniques
BioTechniques 工程技术-生化研究方法
CiteScore
4.40
自引率
0.00%
发文量
68
审稿时长
3.3 months
期刊介绍: BioTechniques is a peer-reviewed, open-access journal dedicated to publishing original laboratory methods, related technical and software tools, and methods-oriented review articles that are of broad interest to professional life scientists, as well as to scientists from other disciplines (e.g., chemistry, physics, computer science, plant and agricultural science and climate science) interested in life science applications for their technologies. Since 1983, BioTechniques has been a leading peer-reviewed journal for methods-related research. The journal considers: Reports describing innovative new methods, platforms and software, substantive modifications to existing methods, or innovative applications of existing methods, techniques & tools to new models or scientific questions Descriptions of technical tools that facilitate the design or performance of experiments or data analysis, such as software and simple laboratory devices Surveys of technical approaches related to broad fields of research Reviews discussing advancements in techniques and methods related to broad fields of research Letters to the Editor and Expert Opinions highlighting interesting observations or cautionary tales concerning experimental design, methodology or analysis.
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