{"title":"Integrating immunoinformatics and computational epitope prediction for a vaccine candidate against respiratory syncytial virus","authors":"Truc Ly Nguyen , Heebal Kim","doi":"10.1016/j.idm.2024.04.005","DOIUrl":null,"url":null,"abstract":"<div><p>Respiratory syncytial virus (RSV) poses a significant global health threat, especially affecting infants and the elderly. Addressing this, the present study proposes an innovative approach to vaccine design, utilizing immunoinformatics and computational strategies. We analyzed RSV's structural proteins across both subtypes A and B, identifying potential helper T lymphocyte, cytotoxic T lymphocyte, and linear B lymphocyte epitopes. Criteria such as antigenicity, allergenicity, toxicity, and cytokine-inducing potential were rigorously examined. Additionally, we evaluated the conservancy of these epitopes and their population coverage across various RSV strains. The comprehensive analysis identified six major histocompatibility complex class I (MHC-I) binding, five MHC-II binding, and three B-cell epitopes. These were integrated with suitable linkers and adjuvants to form the vaccine. Further, molecular docking and molecular dynamics simulations demonstrated stable interactions between the vaccine candidate and human Toll-like receptors (TLR4 and TLR5), with a notable preference for TLR4. Immune simulation analysis underscored the vaccine's potential to elicit a strong immune response. This study presents a promising RSV vaccine candidate and offers theoretical support, marking a significant advancement in vaccine development efforts. However, the promising in silico findings need to be further validated through additional in vivo studies.</p></div>","PeriodicalId":36831,"journal":{"name":"Infectious Disease Modelling","volume":null,"pages":null},"PeriodicalIF":8.8000,"publicationDate":"2024-04-16","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.sciencedirect.com/science/article/pii/S2468042724000599/pdfft?md5=e66736343bb91b884036f02184de01a1&pid=1-s2.0-S2468042724000599-main.pdf","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"Infectious Disease Modelling","FirstCategoryId":"3","ListUrlMain":"https://www.sciencedirect.com/science/article/pii/S2468042724000599","RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q1","JCRName":"Medicine","Score":null,"Total":0}
引用次数: 0
Abstract
Respiratory syncytial virus (RSV) poses a significant global health threat, especially affecting infants and the elderly. Addressing this, the present study proposes an innovative approach to vaccine design, utilizing immunoinformatics and computational strategies. We analyzed RSV's structural proteins across both subtypes A and B, identifying potential helper T lymphocyte, cytotoxic T lymphocyte, and linear B lymphocyte epitopes. Criteria such as antigenicity, allergenicity, toxicity, and cytokine-inducing potential were rigorously examined. Additionally, we evaluated the conservancy of these epitopes and their population coverage across various RSV strains. The comprehensive analysis identified six major histocompatibility complex class I (MHC-I) binding, five MHC-II binding, and three B-cell epitopes. These were integrated with suitable linkers and adjuvants to form the vaccine. Further, molecular docking and molecular dynamics simulations demonstrated stable interactions between the vaccine candidate and human Toll-like receptors (TLR4 and TLR5), with a notable preference for TLR4. Immune simulation analysis underscored the vaccine's potential to elicit a strong immune response. This study presents a promising RSV vaccine candidate and offers theoretical support, marking a significant advancement in vaccine development efforts. However, the promising in silico findings need to be further validated through additional in vivo studies.
呼吸道合胞病毒(RSV)对全球健康构成重大威胁,尤其影响婴儿和老年人。针对这一问题,本研究提出了一种利用免疫信息学和计算策略进行疫苗设计的创新方法。我们分析了 RSV 的 A 和 B 亚型结构蛋白,确定了潜在的辅助性 T 淋巴细胞、细胞毒性 T 淋巴细胞和线性 B 淋巴细胞表位。我们对抗原性、过敏性、毒性和细胞因子诱导潜力等标准进行了严格审查。此外,我们还评估了这些表位的保守性及其在不同 RSV 株系中的群体覆盖率。综合分析确定了六个主要组织相容性复合体 I 类(MHC-I)结合表位、五个 MHC-II 结合表位和三个 B 细胞表位。这些表位与合适的连接剂和佐剂结合形成了疫苗。此外,分子对接和分子动力学模拟证明候选疫苗与人类 Toll 样受体(TLR4 和 TLR5)之间存在稳定的相互作用,其中 TLR4 具有明显的偏好。免疫模拟分析强调了该疫苗引起强烈免疫反应的潜力。这项研究提出了一种很有前景的 RSV 候选疫苗,并提供了理论支持,标志着疫苗开发工作取得了重大进展。不过,这些有前景的硅学研究结果还需要通过更多的体内研究来进一步验证。
期刊介绍:
Infectious Disease Modelling is an open access journal that undergoes peer-review. Its main objective is to facilitate research that combines mathematical modelling, retrieval and analysis of infection disease data, and public health decision support. The journal actively encourages original research that improves this interface, as well as review articles that highlight innovative methodologies relevant to data collection, informatics, and policy making in the field of public health.