Min Hou, Muhammad Shoaib Akhtar, Masahiro Hayashi, Ryuichi Ashino, Akiko Matsumoto-Oda, Takashi Hayakawa, Takafumi Ishida, Amanda D. Melin, Hiroo Imai, Shoji Kawamura
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引用次数: 0
Abstract
Bitter taste perception is important in preventing animals from ingesting potentially toxic compounds. Whole-genome assembly (WGA) data have revealed that bitter taste receptor genes (TAS2Rs) comprise a multigene family with dozens of intact and disrupted genes in primates. However, publicly available WGA data are often incomplete, especially for multigene families. In this study, we employed a targeted capture (TC) approach specifically probing TAS2Rs for ten species of cercopithecid primates with diverse diets, including eight omnivorous cercopithecine species and two folivorous colobine species. We designed RNA probes for all TAS2Rs that we modeled to be intact in the common ancestor of cercopithecids (“ancestral-cercopithecid TAS2R gene set”). The TC was followed by short-read and high-depth massive-parallel sequencing. TC retrieved more intact TAS2R genes than found in WGA databases. We confirmed a large number of gene “births” at the common ancestor of cercopithecids and found that the colobine common ancestor and the cercopithecine common ancestor had contrasting trajectories: four gene “deaths” and three gene births, respectively. The number of intact TAS2R genes was markedly reduced in colobines (25–28 detected via TC and 20–26 detected via WGA analysis) as compared with cercopithecines (27–36 via TC and 19–30 via WGA). Birth or death events occurred at almost every phylogenetic-tree branch, making the composition of intact genes variable among species. These results show that evolutionary change in intact TAS2R genes is a complex process, refute a simple general prediction that herbivory favors more TAS2R genes, and have implications for understanding dietary adaptations and the evolution of detoxification abilities.
期刊介绍:
Primates is an international journal of primatology whose aim is to provide a forum for the elucidation of all aspects of primates. The oldest primatological journal, Primates publishes original papers that advance the scientific study of primates, and its scope embraces work in diverse fields covering biological bases of behavior, socio-ecology, learning and cognition, social processes, systematics, evolution, and medicine. Contributions relevant to conservation of natural populations and welfare of captive primates are welcome. Studies focusing on nonprimate species may be considered if their relevance to primatology is clear. Original Articles as well as Review Articles, News and Perspectives, and Book Reviews are included. All manuscripts received are initially screened for suitability by members of the Editorial Board, taking into account style and ethical issues, leading to a swift decision about whether to send the manuscript for external review.