N. B. Maulydia, K. Khairan, T. Tallei, Salaswati Salaswati, Annisa Musdalifah, Fiki Farah Nabila, R. Idroes
{"title":"Exploring the Medicinal Potential of Blumea balsamifera: Insights from Molecular Docking and Molecular Dynamics Simulations Analyses","authors":"N. B. Maulydia, K. Khairan, T. Tallei, Salaswati Salaswati, Annisa Musdalifah, Fiki Farah Nabila, R. Idroes","doi":"10.60084/mp.v2i1.168","DOIUrl":null,"url":null,"abstract":"Blumea balsamifera from the Ie-Jue geothermal area in Aceh Province, Indonesia, has been reported to have a variety of secondary metabolites. However, there is limited information about the activity of these chemical metabolites from B. balsamifera. The aim of this study is to evaluate the therapeutic potential of these compounds using molecular docking and molecular dynamics simulations. Six selective compounds were thoroughly evaluated using molecular docking techniques for their inhibitory effects on both Coronavirus protease and human interleukin receptors. Additionally, druglikeness assessments based on the Lipinski rule of five were performed to evaluate these six ligands. Our results show that stigmasterol, a key component of B. balsamifera, has demonstrated low binding free energy values across four receptors. Furthermore, molecular dynamics simulations confirmed the stability of the top ligand-receptor complex, particularly stigmasterol-1IRA, based on five parameters, indicating its stability as an inhibitor. This research highlights the potential of stigmasterol as a therapeutic agent derived from medicinal plants of B. balsamifera and underscores the value of our molecular approach in identifying opportunities for pharmaceutical development.","PeriodicalId":182386,"journal":{"name":"Malacca Pharmaceutics","volume":"85 4","pages":""},"PeriodicalIF":0.0000,"publicationDate":"2024-03-31","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"Malacca Pharmaceutics","FirstCategoryId":"1085","ListUrlMain":"https://doi.org/10.60084/mp.v2i1.168","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"","JCRName":"","Score":null,"Total":0}
引用次数: 0
Abstract
Blumea balsamifera from the Ie-Jue geothermal area in Aceh Province, Indonesia, has been reported to have a variety of secondary metabolites. However, there is limited information about the activity of these chemical metabolites from B. balsamifera. The aim of this study is to evaluate the therapeutic potential of these compounds using molecular docking and molecular dynamics simulations. Six selective compounds were thoroughly evaluated using molecular docking techniques for their inhibitory effects on both Coronavirus protease and human interleukin receptors. Additionally, druglikeness assessments based on the Lipinski rule of five were performed to evaluate these six ligands. Our results show that stigmasterol, a key component of B. balsamifera, has demonstrated low binding free energy values across four receptors. Furthermore, molecular dynamics simulations confirmed the stability of the top ligand-receptor complex, particularly stigmasterol-1IRA, based on five parameters, indicating its stability as an inhibitor. This research highlights the potential of stigmasterol as a therapeutic agent derived from medicinal plants of B. balsamifera and underscores the value of our molecular approach in identifying opportunities for pharmaceutical development.
据报道,印度尼西亚亚齐省Ie-Jue地热区的Blumea balsamifera含有多种次生代谢物。然而,有关 B. balsamifera 中这些化学代谢物活性的信息却很有限。本研究旨在利用分子对接和分子动力学模拟评估这些化合物的治疗潜力。研究人员利用分子对接技术全面评估了六种选择性化合物对冠状病毒蛋白酶和人类白细胞介素受体的抑制作用。此外,我们还根据利宾斯基五项原则对这六种配体进行了药物亲和性评估。我们的研究结果表明,苦木的主要成分豆固醇在四种受体中的结合自由能值较低。此外,分子动力学模拟证实了配体-受体复合物(尤其是豆固醇-1IRA)在五个参数基础上的稳定性,表明其作为抑制剂的稳定性。这项研究凸显了麦角甾醇作为一种从香脂树药用植物中提取的治疗药物的潜力,并强调了我们的分子方法在确定药物开发机会方面的价值。