On the simulation and interpretation of substrate-water exchange experiments in photosynthetic water oxidation.

IF 2.9 3区 生物学 Q2 PLANT SCIENCES
Photosynthesis Research Pub Date : 2024-12-01 Epub Date: 2024-03-21 DOI:10.1007/s11120-024-01084-8
Petko Chernev, A Orkun Aydin, Johannes Messinger
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引用次数: 0

Abstract

Water oxidation by photosystem II (PSII) sustains most life on Earth, but the molecular mechanism of this unique process remains controversial. The ongoing identification of the binding sites and modes of the two water-derived substrate oxygens ('substrate waters') in the various intermediates (Si states, i = 0, 1, 2, 3, 4) that the water-splitting tetra-manganese calcium penta-oxygen (Mn4CaO5) cluster attains during the reaction cycle provides central information towards resolving the unique chemistry of biological water oxidation. Mass spectrometric measurements of single- and double-labeled dioxygen species after various incubation times of PSII with H218O provide insight into the substrate binding modes and sites via determination of exchange rates. Such experiments have revealed that the two substrate waters exchange with different rates that vary independently with the Si state and are hence referred to as the fast (Wf) and the slow (WS) substrate waters. New insight for the molecular interpretation of these rates arises from our recent finding that in the S2 state, under special experimental conditions, two different rates of WS exchange are observed that appear to correlate with the high spin and low spin conformations of the Mn4CaO5 cluster. Here, we reexamine and unite various proposed methods for extracting and assigning rate constants from this recent data set. The analysis results in a molecular model for substrate-water binding and exchange that reconciles the expected non-exchangeability of the central oxo bridge O5 when located between two Mn(IV) ions with the experimental and theoretical assignment of O5 as WS in all S states. The analysis also excludes other published proposals for explaining the water exchange kinetics.

Abstract Image

关于光合作用水氧化过程中基质-水交换实验的模拟和解释。
光系统 II(PSII)的水氧化作用维持着地球上的大部分生命,但这一独特过程的分子机制仍存在争议。目前正在对分裂水的四锰五氧钙(Mn4CaO5)簇在反应循环过程中达到的各种中间态(Si 态,i = 0、1、2、3、4)中两个源于水的底物氧原子("底物水")的结合位点和模式进行鉴定,这为解决生物水氧化的独特化学过程提供了核心信息。在 PSII 与 H218O 进行不同时间的孵育后,对单标和双标二氧物种进行质谱测量,通过确定交换率来了解底物的结合模式和位点。这些实验表明,两种底物水的交换速率不同,且随 Si 状态的变化而变化,因此被称为快(Wf)和慢(WS)底物水。我们最近发现,在 S2 状态下,在特殊的实验条件下,可以观察到两种不同的 WS 交换速率,这似乎与 Mn4CaO5 团簇的高自旋和低自旋构象相关,从而为这些速率的分子解释提供了新的见解。在此,我们重新研究并统一了从这组最新数据中提取和分配速率常数的各种建议方法。分析得出了底物与水结合和交换的分子模型,该模型调和了位于两个 Mn(IV)离子之间的中心氧化桥 O5 的预期不可交换性与所有 S 态中 O5 作为 WS 的实验和理论分配。分析还排除了其他已发表的解释水交换动力学的建议。
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来源期刊
Photosynthesis Research
Photosynthesis Research 生物-植物科学
CiteScore
6.90
自引率
8.10%
发文量
91
审稿时长
4.5 months
期刊介绍: Photosynthesis Research is an international journal open to papers of merit dealing with both basic and applied aspects of photosynthesis. It covers all aspects of photosynthesis research, including, but not limited to, light absorption and emission, excitation energy transfer, primary photochemistry, model systems, membrane components, protein complexes, electron transport, photophosphorylation, carbon assimilation, regulatory phenomena, molecular biology, environmental and ecological aspects, photorespiration, and bacterial and algal photosynthesis.
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