Data-centric species distribution modeling: Impacts of modeler decisions in a case study of invasive European frog-bit

IF 2.7 3区 生物学 Q2 PLANT SCIENCES
Sara E. Hansen, Michael J. Monfils, Rachel A. Hackett, Ryan T. Goebel, Anna K. Monfils
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引用次数: 0

Abstract

Premise

Species distribution models (SDMs) are widely utilized to guide conservation decisions. The complexity of available data and SDM methodologies necessitates considerations of how data are chosen and processed for modeling to enhance model accuracy and support biological interpretations and ecological applications.

Methods

We built SDMs for the invasive aquatic plant European frog-bit using aggregated and field data that span multiple scales, data sources, and data types. We tested how model results were affected by five modeler decision points: the exclusion of (1) missing and (2) correlated data and the (3) scale (large-scale aggregated data or systematic field data), (4) source (specimens or observations), and (5) type (presence-background or presence-absence) of occurrence data.

Results

Decisions about the exclusion of missing and correlated data, as well as the scale and type of occurrence data, significantly affected metrics of model performance. The source and type of occurrence data led to differences in the importance of specific explanatory variables as drivers of species distribution and predicted probability of suitable habitat.

Discussion

Our findings relative to European frog-bit illustrate how specific data selection and processing decisions can influence the outcomes and interpretation of SDMs. Data-centric protocols that incorporate data exploration into model building can help ensure models are reproducible and can be accurately interpreted in light of biological questions.

Abstract Image

以数据为中心的物种分布建模:欧洲蛙咬入侵案例研究中建模者决策的影响
前提物种分布模型(SDM)被广泛用于指导保护决策。可用数据和 SDM 方法的复杂性要求我们必须考虑如何选择和处理建模数据,以提高模型的准确性并支持生物学解释和生态学应用。我们测试了建模者的五个决策点对模型结果的影响:(1) 排除缺失数据和 (2) 排除相关数据;(3) 出现数据的规模(大规模汇总数据或系统野外数据)、(4) 来源(标本或观测数据)和 (5) 类型(存在-背景或存在-缺失)。结果排除缺失数据和相关数据以及出现数据的规模和类型对模型性能指标有显著影响。出现数据的来源和类型导致了特定解释变量作为物种分布和适宜栖息地预测概率的驱动因素在重要性上的差异。以数据为中心、将数据挖掘纳入模型构建的方案有助于确保模型的可重复性,并能根据生物学问题进行准确解释。
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来源期刊
CiteScore
7.30
自引率
0.00%
发文量
50
审稿时长
12 weeks
期刊介绍: Applications in Plant Sciences (APPS) is a monthly, peer-reviewed, open access journal promoting the rapid dissemination of newly developed, innovative tools and protocols in all areas of the plant sciences, including genetics, structure, function, development, evolution, systematics, and ecology. Given the rapid progress today in technology and its application in the plant sciences, the goal of APPS is to foster communication within the plant science community to advance scientific research. APPS is a publication of the Botanical Society of America, originating in 2009 as the American Journal of Botany''s online-only section, AJB Primer Notes & Protocols in the Plant Sciences. APPS publishes the following types of articles: (1) Protocol Notes describe new methods and technological advancements; (2) Genomic Resources Articles characterize the development and demonstrate the usefulness of newly developed genomic resources, including transcriptomes; (3) Software Notes detail new software applications; (4) Application Articles illustrate the application of a new protocol, method, or software application within the context of a larger study; (5) Review Articles evaluate available techniques, methods, or protocols; (6) Primer Notes report novel genetic markers with evidence of wide applicability.
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