4D label-free quantitative proteomic analysis identifies CRABP1 as a novel candidate gene for litter size in rabbits†.

IF 4.3 3区 材料科学 Q1 ENGINEERING, ELECTRICAL & ELECTRONIC
Zhiyuan Bao, Yang Chen, Jiali Li, Jiawei Cai, Jie Yang, Pin Zhai, Bohao Zhao, Xinsheng Wu
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Abstract

In commercial rabbit breeding, litter size is a crucial reproductive trait. This trait directly determines the reproductive ability of female rabbits and is crucial for evaluating the production efficiency. We here compared differentially expressed proteins of in the ovary tissue from New Zealand female rabbits with high (H) and low (L) litter sizes by using 4D label-free quantitative proteomic technology and identified 92 differential proteins. The biological functions of these proteins were revealed through gene ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) enrichment analyses. Most distributions of GO and KEGG were related to reproduction, growth development, and metabolism. Furthermore, a novel candidate gene cellular retinoic acid binding protein-1 (CRABP1), which was highly expressed in the L group, was selected for further biological function verification. The Cell Counting Kit-8 (CCK-8) assay and flow cytometry analysis revealed that CRABP1 can promote granulosa cell (GC) apoptosis and inhibit GC proliferation. Furthermore, qRT-PCR and western blotting analysis revealed that CRABP1 regulates the genes (HSD17B1, Wnt-10b, FSHR, TAF4B, BMP15, and BMP6) and protein (Wnt-10b) associated with steroid hormone synthesis and follicle development. The PCR product direct sequencing method revealed single nucleotide polymorphisms in the core promoter region of CRABP1. Luciferase activity assays revealed that the transcriptional activity of the GG genotype was significantly higher than that of the TT or TG genotype. Different genotypes are accompanied by changes in transcription factors, which indicates that T-359G polymorphism can regulate CRABP1 expression. In general, we identified litter size-related genes and revealed the mechanism underlying the effect of CRABP1 on litter size. CRABP1 serves as a key factor in the reproductive capacity of rabbits and can act as a molecular biomarker for the breeding of New Zealand rabbits.

4D 无标记定量蛋白质组分析发现 CRABP1 是影响兔子产仔数的新型候选基因。
在商品兔育种中,产仔数是一个重要的繁殖性状。这一性状直接决定了母兔的繁殖能力,也是评估生产效率的关键。在此,我们利用 4D 无标记定量蛋白质组学技术比较了新西兰产仔数高(H)和产仔数低(L)母兔卵巢组织中的差异表达蛋白,并鉴定出 92 个差异蛋白。通过基因本体(GO)和京都基因组百科全书(KEGG)富集分析,揭示了这些蛋白质的生物学功能。GO和KEGG的大部分分布与繁殖、生长发育和新陈代谢有关。此外,还选择了一个在 L 组中高表达的新候选基因细胞维甲酸结合蛋白-1(CRABP1)进行进一步的生物学功能验证。细胞计数试剂盒-8测定和流式细胞仪分析表明,CRABP1能促进颗粒细胞(GC)凋亡并抑制GC增殖。此外,qRT-PCR和Western印迹分析显示,CRABP1调控与类固醇激素合成和卵泡发育相关的基因(HSD17B1、Wnt-10b、FSHR、TAF4B、BMP15和BMP6)和蛋白(Wnt-10b)。PCR 产物直接测序法发现了 CRABP1 核心启动子区域的单核苷酸多态性。荧光素酶活性测定显示,GG 基因型的转录活性明显高于 TT 或 TG 基因型。不同基因型伴随着转录因子的变化,这表明T-359G多态性可调控CRABP1的表达。总之,我们发现了产仔数相关基因,揭示了CRABP1对产仔数的影响机制。CRABP1是影响家兔繁殖能力的关键因素,可作为新西兰兔育种的分子生物标记。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
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来源期刊
CiteScore
7.20
自引率
4.30%
发文量
567
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