Construction of an Oxidative Stress Risk Model to Analyze the Correlation Between Liver Cancer and Tumor Immunity.

IF 4.6 Q2 MATERIALS SCIENCE, BIOMATERIALS
Ying Liu, Yufeng Li, Li Chen, Weina Zha, Jing Zhang, Kun Wang, Chunhai Hao, Jianhe Gan
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引用次数: 0

Abstract

Background: Hepatocellular carcinoma (HCC) remains one of the most lethal cancers globally. Despite advancements in immunotherapy, the prognosis for patients with HCC continues to be poor. As oxidative stress plays a significant role in the onset and progression of various diseases, including metabolism-related HCC, comprehending its mechanism in HCC is critical for effective diagnosis and treatment.

Methods: This study utilized the TCGA dataset and a collection of oxidative stress genes to determine the expression of oxidative stress-related genes in HCC and their association with overall survival using diverse bioinformatics methods. A novel prognostic risk model was developed, and the TCGA cohort was divided into high-risk and low-risk groups based on each tumor sample's risk score. Levels of immune cell infiltration and the expression of immune checkpoint-related genes in different risk subgroups were analyzed to investigate the potential link between tumor immunity and oxidative stress-related features. The expression of model genes in actual samples was validated through immunohistochemistry, and their mRNA and protein expression levels were measured in cell cultures.

Results: Four oxidative stress-related genes (EZH2, ANKZF1, G6PD, and HMOX1) were identified and utilized to create a predictive risk model for HCC patient overall survival, which was subsequently validated in an independent cohort. A significant correlation was found between the expression of these prognostic genes and the infiltration of tumor immune cells. Elevated expression of EZH2, ANKZF1, G6PD, and HMOX1 was observed in both HCC tissues and cell lines.

Conclusion: The combined assessment of EZH2, ANKZF1, G6PD, and HMOX1 gene expression can serve as a model to evaluate the risk of oxidative stress in HCC. Furthermore, there is a notable correlation between the expression of these risk model genes and tumor immunity.

构建氧化应激风险模型,分析肝癌与肿瘤免疫之间的相关性
背景:肝细胞癌(HCC)仍然是全球致死率最高的癌症之一。尽管免疫疗法取得了进展,但 HCC 患者的预后仍然很差。由于氧化应激在各种疾病(包括代谢相关的 HCC)的发生和进展中起着重要作用,因此了解其在 HCC 中的作用机制对于有效诊断和治疗至关重要:本研究利用TCGA数据集和氧化应激基因集合,采用多种生物信息学方法确定氧化应激相关基因在HCC中的表达及其与总生存率的关系。研究建立了一个新的预后风险模型,并根据每个肿瘤样本的风险评分将TCGA队列分为高风险组和低风险组。分析了不同风险亚组的免疫细胞浸润水平和免疫检查点相关基因的表达,以研究肿瘤免疫和氧化应激相关特征之间的潜在联系。通过免疫组化验证了模型基因在实际样本中的表达,并在细胞培养中测量了它们的mRNA和蛋白质表达水平:结果:发现了四个氧化应激相关基因(EZH2、ANKZF1、G6PD和HMOX1),并利用它们建立了一个预测HCC患者总生存率的风险模型,随后在一个独立队列中进行了验证。研究发现,这些预后基因的表达与肿瘤免疫细胞的浸润之间存在明显的相关性。在HCC组织和细胞系中都观察到了EZH2、ANKZF1、G6PD和HMOX1的表达升高:结论:EZH2、ANKZF1、G6PD 和 HMOX1 基因表达的联合评估可作为评估 HCC 氧化应激风险的模型。此外,这些风险模型基因的表达与肿瘤免疫之间存在明显的相关性。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
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来源期刊
ACS Applied Bio Materials
ACS Applied Bio Materials Chemistry-Chemistry (all)
CiteScore
9.40
自引率
2.10%
发文量
464
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