Optimization of TROSY- and anti-TROSY-based 15N CPMG relaxation dispersion experiments through phase cycling

IF 2 3区 化学 Q3 BIOCHEMICAL RESEARCH METHODS
Yingxian Cui , Yangzhuoyue Jin , Yu Hou , Xiaoxu Han , Haiyan Cao , Lewis E. Kay , Tairan Yuwen
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Abstract

CPMG relaxation dispersion studies of biomolecular dynamics on the μs–ms timescale can provide detailed kinetic, thermodynamic, and structural insights into function. Frequently, the 15N spin serves as the probe of choice, as uniform incorporation of the 15N isotope is facile and cost-effective, and the interpretation of the resulting data is often relatively straightforward. In conventional CPMG relaxation dispersion experiments the application of CPMG pulses with constant radiofrequency (RF) phase can lead to artifactual dispersion profiles that result from off-resonance effects, RF field inhomogeneity, and pulse miscalibration. The development of CPMG experiments with the [0013]-phase cycle has significantly reduced the impact of pulse imperfections over a greater bandwidth of frequency offsets in comparison to constant phase experiments. Application of 15N-TROSY-based CPMG schemes to studies of the dynamics of large molecules is necessary for high sensitivity, yet the correct incorporation of the [0013]-phase cycle is non-trivial. Here we present TROSY- and anti-TROSY-based 15N CPMG experiments with the [0013]-phase cycling scheme and demonstrate, through comprehensive numerical simulations and experimental validation, enhanced resistance to pulse imperfections relative to traditional schemes utilizing constant phase CPMG pulses. Notably, exchange parameters derived from the new experiments are in good agreement with those obtained using other, more established, 15N-based CPMG approaches.

Abstract Image

通过相循环优化基于 TROSY 和反 TROSY 的 15N CPMG 弛豫弥散实验
微毫秒时间尺度上的生物分子动力学 CPMG 驰豫弥散研究可以提供有关功能的详细动力学、热力学和结构见解。通常,15N 自旋是首选探针,因为 15N 同位素的均匀掺入既方便又经济,而且对所得数据的解释通常也相对简单。在传统的 CPMG 驰豫弥散实验中,应用具有恒定射频(RF)相位的 CPMG 脉冲可能会导致由于非共振效应、射频场不均匀性和脉冲误校准而产生的假弥散曲线。与恒定相位实验相比,使用 [0013]- 相位循环的 CPMG 实验的发展大大降低了脉冲不完美对更大频率偏移带宽的影响。将基于 15N-TROSY 的 CPMG 方案应用于大分子动力学研究对于实现高灵敏度是非常必要的,然而正确纳入 [0013] 相周期并非易事。在此,我们介绍了采用 [0013] 相循环方案的基于 TROSY 和反 TROSY 的 15N CPMG 实验,并通过全面的数值模拟和实验验证证明,相对于利用恒定相 CPMG 脉冲的传统方案,该方案具有更强的抗脉冲缺陷能力。值得注意的是,新实验得出的交换参数与使用其他更成熟的基于 15N 的 CPMG 方法得出的交换参数非常一致。
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来源期刊
CiteScore
3.80
自引率
13.60%
发文量
150
审稿时长
69 days
期刊介绍: The Journal of Magnetic Resonance presents original technical and scientific papers in all aspects of magnetic resonance, including nuclear magnetic resonance spectroscopy (NMR) of solids and liquids, electron spin/paramagnetic resonance (EPR), in vivo magnetic resonance imaging (MRI) and spectroscopy (MRS), nuclear quadrupole resonance (NQR) and magnetic resonance phenomena at nearly zero fields or in combination with optics. The Journal''s main aims include deepening the physical principles underlying all these spectroscopies, publishing significant theoretical and experimental results leading to spectral and spatial progress in these areas, and opening new MR-based applications in chemistry, biology and medicine. The Journal also seeks descriptions of novel apparatuses, new experimental protocols, and new procedures of data analysis and interpretation - including computational and quantum-mechanical methods - capable of advancing MR spectroscopy and imaging.
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