Shrimp classification for white spot syndrome detection through enhanced gated recurrent unit-based wild geese migration optimization algorithm

IF 1.9 4区 医学 Q3 GENETICS & HEREDITY
L. Ramachandran, S. P. Mangaiyarkarasi, A. Subramanian, S. Senthilkumar
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引用次数: 0

Abstract

The major dangerous viral infection for cultivated shrimps is WSSV. The virus is extremely dangerous, spreads swiftly, and may result in up to 100% mortality in 3–10 days. The vast wrapped double stranded DNA virus known as WSSV describes a member of the Nimaviridae viral family’s species Whispovirus. It impacts a variety of crustacean hosts but predominantly marine shrimp species that are raised for commercial purposes. The entire age groups are affected by the virus, which leads to widespread mortality. Mesodermal and ectodermal tissues, like the lymph nodes, gills, and cuticular epithelium, represents the centres of infection. Complete genome sequencing related to the WSSV strains from Thailand, China, and Taiwan has identified minute genetic variations amongst them. There exist conflicting findings on the causes of WSSV pathogenicity, which involve variations in the size associated with the genome, the count of tandem repeats, and the availability or lack of certain proteins. Hence, this paper plans to perform the shrimp classification for the WSSV on the basis of novel deep learning methodology. Initially, the data is gathered from the farms as well as internet sources. Next, the pre-processing of the gathered shrimp images is accomplished using the LBP technique. These pre-processed images undergo the segmentation process utilizing the TGVFCMS approach. The extraction of the features from these segmented images is performed by the PLDA technique. In the final step, the classification of the shrimp into healthy shrimp and WSSV affected shrimp is done by the EGRU, in which the parameter tuning is accomplished by the wild GMO algorithm with the consideration of accuracy maximization as the major objective function. Performance indicators for accuracy have been compared with those of various conventional methods, and the results show that the methodology is capable of accurately identifying the shrimp WSSV illness.

Abstract Image

通过基于大雁迁徙优化算法的增强型门控递归单元进行白斑综合征检测的虾类分类
对养殖虾来说,最危险的病毒感染是 WSSV。这种病毒极其危险,传播迅速,可在 3-10 天内导致 100% 的死亡。被称为 WSSV 的巨大包裹型双股 DNA 病毒是尼玛病毒科病毒属 Whispovirus 的一种。它影响多种甲壳类宿主,但主要是以商业目的饲养的海虾。整个年龄组都会受到病毒影响,导致大面积死亡。淋巴结、鳃和角质上皮等中胚层和外胚层组织是感染中心。对泰国、中国和台湾的 WSSV 株系进行的全基因组测序发现,它们之间存在微小的基因变异。关于 WSSV 致病性的原因,存在着相互矛盾的研究结果,其中涉及基因组大小、串联重复次数以及是否存在某些蛋白质等方面的变化。因此,本文计划在新型深度学习方法的基础上对 WSSV 进行虾类分类。首先,从养殖场和互联网上收集数据。然后,使用 LBP 技术对收集到的虾图像进行预处理。利用 TGVFCMS 方法对这些预处理图像进行分割。利用 PLDA 技术从这些分割图像中提取特征。最后,利用 EGRU 将对虾分为健康对虾和受 WSSV 感染的对虾,其中的参数调整由野生 GMO 算法完成,主要目标函数是考虑准确率最大化。准确度的性能指标与各种传统方法的性能指标进行了比较,结果表明该方法能够准确识别对虾的 WSSV 疾病。
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来源期刊
Virus Genes
Virus Genes 医学-病毒学
CiteScore
3.30
自引率
0.00%
发文量
76
审稿时长
3 months
期刊介绍: Viruses are convenient models for the elucidation of life processes. The study of viruses is again on the cutting edge of biological sciences: systems biology, genomics, proteomics, metagenomics, using the newest most powerful tools. Huge amounts of new details on virus interactions with the cell, other pathogens and the hosts – animal (including human), insect, fungal, plant, bacterial, and archaeal - and their role in infection and disease are forthcoming in perplexing details requiring analysis and comments. Virus Genes is dedicated to the publication of studies on the structure and function of viruses and their genes, the molecular and systems interactions with the host and all applications derived thereof, providing a forum for the analysis of data and discussion of its implications, and the development of new hypotheses.
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