Linkage and Next Generation Sequencing (NGS) Data in Six Large Danish Families with Dyslexia

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Abstract

Dyslexia is a common learning disability exhibited as a delay in acquiring reading skills despite adequate intelligence, and reading single real words are impaired in many dyslexics. Reading disability or developmental dyslexia (DD) is a neurodevelopmental disorder affecting children, and the molecular mechanisms underlying are largely underdetermined, while loci and susceptibility genes are suggested by genetic mapping in families or cohorts and by genome wide association studies (GWAS). To identify a possible genetic cause, we genotyped and performed genome wide linkage analysis employing the programs LIPED and SNP6-LINK of six multigenerational families with autosomal dominant inherited dyslexia. The linkage analyses resulted in informative haplotypes segregating with the dyslexic trait in all families and a LOD score of Z>4 at 13q12.3 and 19p13.3, and a LOD score of Z>3 at 15q23-q24.1, 18q11.21, and 21q22.3. The five mapped regions are supported by previous linkage or associations studies. Whole genome sequencing of dyslexic individuals in the six family’s failed to identify protein located mutations and a catalogue of possible regulatory variants are suggested as causative for dyslexia
六个丹麦阅读障碍大家庭的关联和新一代测序 (NGS) 数据
阅读障碍是一种常见的学习障碍,表现为尽管智力正常,但在掌握阅读技能方面却出现延迟,许多阅读障碍患者在阅读单个实词时出现障碍。阅读障碍或发育性阅读障碍(DD)是一种影响儿童的神经发育障碍,其分子机制在很大程度上尚未确定,而家族或队列遗传图谱以及全基因组关联研究(GWAS)则提出了基因位点和易感基因。为了找出可能的遗传原因,我们利用 LIPED 和 SNP6-LINK 程序对六个多代常染色体显性遗传阅读障碍家族进行了基因分型和全基因组关联分析。联系分析结果显示,在所有家族中,有信息的单倍型与阅读障碍性状分离,13q12.3 和 19p13.3 的 LOD 得分 Z>4 ,15q23-q24.1、18q11.21 和 21q22.3 的 LOD 得分 Z>3 。这五个映射区域都得到了先前的连锁或关联研究的支持。对 6 个家族中的阅读障碍患者进行的全基因组测序未能发现蛋白质定位突变,因此建议将一系列可能的调控变异作为阅读障碍的致病因素。
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