Identification of the Hub Genes Linked to Lead (IV)-Induced Spleen Toxicity Using the Rat Model.

IF 3.4 3区 生物学 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY
Biological Trace Element Research Pub Date : 2024-10-01 Epub Date: 2023-12-28 DOI:10.1007/s12011-023-04036-w
Bing Yang, Zhongyuan Wang, Zhongze Hu, Shujuan Wang, Jingen Xu, Xiaofeng Li
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Abstract

Exposure to lead (Pb) has harmful effects on the organs of both humans and animals, particularly the spleen. However, the precise mechanisms through which Pb (IV) exposure leads to spleen toxicity remain unclear. Hence, this study aimed to identify the key genes and signaling pathways involved in spleen toxicity caused by Pb (IV) incubation. We obtained the dataset GSE59925 from the Gene Expression Omnibus, which included spleen samples treated with lead tetraacetate (PbAc4) as well as control samples on the 1st and 5th day. Through differential expression analysis, we identified 607 and 704 differentially expressed genes (DEGs) in the spleens on the 1st and 5th day following PbAc4 treatment, respectively, with 245 overlapping DEGs between the two time points. Gene ontology analysis revealed that the commonly shared DEGs were primarily involved in signal transduction, drug response, cell proliferation, adhesion, and migration. Pathway analysis indicated that the common DEGs were primarily associated with MAPK, TNF, cAMP, Hippo, and TGF-β signaling pathways. Furthermore, we identified the hub genes such as CXCL10, PARP1, APOE, and VDR contributing to PbAc4-induced spleen toxicity. This study enhances our understanding of the molecular mechanisms underlying Pb (IV) toxicity in the spleen.

Abstract Image

利用大鼠模型鉴定与铅(IV)诱导的脾脏毒性相关的枢纽基因
接触铅(Pb)会对人类和动物的器官产生有害影响,尤其是脾脏。然而,铅(IV)暴露导致脾脏毒性的确切机制仍不清楚。因此,本研究旨在确定参与铅(IV)培养引起脾脏毒性的关键基因和信号通路。我们从基因表达总库(Gene Expression Omnibus)中获得了数据集 GSE59925,其中包括经四乙酸铅(PbAc4)处理的脾脏样本以及第 1 天和第 5 天的对照样本。通过差异表达分析,我们分别在四乙酸铅处理后第1天和第5天的脾脏中发现了607个和704个差异表达基因(DEGs),其中有245个DEGs在两个时间点之间重叠。基因本体分析表明,共同的 DEGs 主要参与信号转导、药物反应、细胞增殖、粘附和迁移。通路分析表明,共有的 DEGs 主要与 MAPK、TNF、cAMP、Hippo 和 TGF-β 信号通路有关。此外,我们还发现了CXCL10、PARP1、APOE和VDR等导致PbAc4诱导的脾脏毒性的枢纽基因。这项研究加深了我们对铅(IV)在脾脏中毒性的分子机制的理解。
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来源期刊
Biological Trace Element Research
Biological Trace Element Research 生物-内分泌学与代谢
CiteScore
8.70
自引率
10.30%
发文量
459
审稿时长
2 months
期刊介绍: Biological Trace Element Research provides a much-needed central forum for the emergent, interdisciplinary field of research on the biological, environmental, and biomedical roles of trace elements. Rather than confine itself to biochemistry, the journal emphasizes the integrative aspects of trace metal research in all appropriate fields, publishing human and animal nutritional studies devoted to the fundamental chemistry and biochemistry at issue as well as to the elucidation of the relevant aspects of preventive medicine, epidemiology, clinical chemistry, agriculture, endocrinology, animal science, pharmacology, microbiology, toxicology, virology, marine biology, sensory physiology, developmental biology, and related fields.
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