Short and long range 2D 15N–15N NMR correlations among peptide groups by novel solid state dipolar mixing schemes

IF 1.3 3区 生物学 Q3 BIOCHEMISTRY & MOLECULAR BIOLOGY
Sungsool Wi, Conggang Li, Karen Pham, Woonghee Lee, Lucio Frydman
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引用次数: 0

Abstract

A recently developed homonuclear dipolar recoupling scheme, Adiabatic Linearly FREquency Swept reCOupling (AL FRESCO), was applied to record two-dimensional (2D) 15N–15N correlations on uniformly 15N-labeled GB1 powders. A major feature exploited in these 15N–15N correlations was AL FRESCO’s remarkably low RF power demands, which enabled seconds-long mixing schemes when establishing direct correlations. These 15N–15N mixing schemes proved efficient regardless of the magic-angle spinning (MAS) rate and, being nearly free from dipolar truncation effects, they enabled the detection of long-range, weak dipolar couplings, even in the presence of strong short-range dipolar couplings. This led to a connectivity information that was significantly better than that obtained with spontaneously proton-driven, 15N spin-diffusion experiments. An indirect approach producing long-range 15N–15N correlations was also tested, relying on short (ms-long) 1HN1HN mixings schemes while applying AL FRESCO chirped pulses along the 15N channel. These indirect mixing schemes produced numerous long-distance Ni–Ni±n (n = 2 − 5) correlations, that might be useful for characterizing three-dimensional arrangements in proteins. Once again, these AL FRESCO mediated experiments proved more informative than variants based on spin-diffusion-based 1HN1HN counterparts.

Abstract Image

通过新型固态双极混合方案实现肽基之间的短程和长程二维 15N-15N NMR 关联性
最近开发的一种同核双极再偶联方案--绝热线性频率扫频再偶联(AL FRESCO),被用于记录均匀 15N 标记的 GB1 粉末上的二维(2D)15N-15N 关联。在这些 15N-15N 关联中利用的一个主要特点是 AL FRESCO 对射频功率的要求极低,这使得在建立直接关联时可以采用长达数秒的混合方案。这些 15N-15N 混合方案被证明是高效的,与魔角旋转(MAS)速率无关,而且几乎不受偶极截断效应的影响,因此即使在存在强短程偶极耦合的情况下,也能检测到长程、弱偶极耦合。这使得连通性信息大大优于自发质子驱动的 15N 自旋扩散实验所获得的信息。我们还测试了一种产生 15N-15N 长程相关性的间接方法,即依靠短(毫秒长)1HN-1HN 混合方案,同时沿 15N 通道应用 AL FRESCO 啁啾脉冲。这些间接混合方案产生了许多长距离的 Ni-Ni±n (n = 2 - 5)相关性,可能有助于表征蛋白质的三维排列。事实再次证明,与基于自旋扩散的 1HN-1HN 对应变体相比,这些 AL FRESCO 介导的实验信息量更大。
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来源期刊
Journal of Biomolecular NMR
Journal of Biomolecular NMR 生物-光谱学
CiteScore
6.00
自引率
3.70%
发文量
19
审稿时长
6-12 weeks
期刊介绍: The Journal of Biomolecular NMR provides a forum for publishing research on technical developments and innovative applications of nuclear magnetic resonance spectroscopy for the study of structure and dynamic properties of biopolymers in solution, liquid crystals, solids and mixed environments, e.g., attached to membranes. This may include: Three-dimensional structure determination of biological macromolecules (polypeptides/proteins, DNA, RNA, oligosaccharides) by NMR. New NMR techniques for studies of biological macromolecules. Novel approaches to computer-aided automated analysis of multidimensional NMR spectra. Computational methods for the structural interpretation of NMR data, including structure refinement. Comparisons of structures determined by NMR with those obtained by other methods, e.g. by diffraction techniques with protein single crystals. New techniques of sample preparation for NMR experiments (biosynthetic and chemical methods for isotope labeling, preparation of nutrients for biosynthetic isotope labeling, etc.). An NMR characterization of the products must be included.
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