Transcriptome Analysis of Escherichia coli Dormant Cystlike Cells

IF 1.3 4区 生物学 Q4 MICROBIOLOGY
Yu. A. Nikolaev, N. G. Loiko, O. A. Galuza, A. V. Mardanov, A. V. Beletskii, D. G. Deryabin, E. V. Demkina, G. I. El’-Registan
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Abstract

The transcriptome of Esherichia coli cystlike dormant cells was investigated. RNA content in a single dormant cell was 0.26 fg, i.e., 13.5 times less than in a cell of a growing culture. The presence of mRNA in E. coli dormant cells has not been reported previously. The pools of gene reads for the dormant and growing cells were characterized, as well as the differential expression of all genes, calculated according to the special algorithm considering the average mRNA amount in a single cell. The notion of the genes active in every cell of the population was introduced. In each cell of the dormant and growing E. coli population, such genes were represented by the transcripts of 21 and 16% of the genes, respectively. The revealed cell heterogeneity regarding set of active genes is one of the reasons (and forms) of heterogeneity of bacterial populations. Sixty genes were revealed, for which activity increased twice or more during formation of E. coli dormant cells. These were the genes responsible for genome activity, structure and properties of the cell envelope, cell proliferation, stress adaptation, biofilm formation and functioning, and collective behavior, as well as the genes providing for survival of the cell population during germination of the dormant cells.

Abstract Image

大肠杆菌休眠囊样细胞转录组分析
摘要:对大肠杆菌囊样休眠细胞的转录组进行了研究。单个休眠细胞中的RNA含量为0.26 fg,即比生长培养的细胞少13.5倍。mRNA在大肠杆菌休眠细胞中的存在以前没有报道过。对休眠细胞和生长细胞的基因读取池进行表征,并根据考虑单细胞平均mRNA量的特殊算法计算所有基因的差异表达。引入了群体中每个细胞中活性基因的概念。在休眠和生长的大肠杆菌群体的每个细胞中,这些基因分别由21%和16%的基因转录本代表。活性基因组所揭示的细胞异质性是细菌群体异质性的原因(和形式)之一。在大肠杆菌休眠细胞的形成过程中,有60个基因的活性增加了两倍或更多。这些基因负责基因组活性、细胞包膜结构和特性、细胞增殖、应激适应、生物膜形成和功能、集体行为,以及在休眠细胞萌发期间提供细胞群体存活的基因。
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来源期刊
Microbiology
Microbiology 生物-微生物学
CiteScore
2.40
自引率
13.30%
发文量
60
审稿时长
6-12 weeks
期刊介绍: Microbiology is an is an international peer reviewed journal that covers a wide range of problems in the areas of fundamental and applied microbiology. The journal publishes experimental and theoretical papers, reviews on modern trends in different fields of microbiological science, and short communications with descriptions of unusual observations. The journal welcomes manuscripts from all countries in the English or Russian language.
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