A chromosome-level genome assembly for the smoky rubyspot damselfly (Hetaerina titia).

IF 3 2区 生物学 Q2 EVOLUTIONARY BIOLOGY
Christophe W Patterson, Erandi Bonillas-Monge, Adrian Brennan, Gregory F Grether, Luis Mendoza-Cuenca, Rachel Tucker, Yesenia M Vega-Sánchez, Jonathan Drury
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引用次数: 0

Abstract

Smoky rubyspot damselflies (Hetaerina titia Drury, 1773) are one of the most commonly encountered odonates along streams and rivers on both slopes of Central America and the Atlantic drainages in the United States and southern Canada. Owing to their highly variable wing pigmentation, they have become a model system for studying sexual selection and interspecific behavioral interference. Here, we sequence and assemble the genome of a female smoky rubyspot. Of the primary assembly (i.e. the principle pseudohaplotype), 98.8% is made up of 12 chromosomal pseudomolecules (2N = 22A + X). There are 75 scaffolds in total, an N50 of 120 Mb, a contig-N50 of 0.64 Mb, and a high arthropod BUSCO score [C: 97.6% (S: 97.3%, D: 0.3%), F: 0.8%, M: 1.6%]. We then compare our assembly to that of the blue-tailed damselfly genome (Ischnura elegans), the most complete damselfly assembly to date, and a recently published assembly for an American rubyspot damselfly (Hetaerina americana). Collectively, these resources make Hetaerina a genome-enabled genus for further studies of the ecological and evolutionary forces shaping biological diversity.

烟斑豆娘(Hetaerina titia)染色体水平基因组组装。
烟熏红斑豆娘(Hetaerina titia Drury, 1773)是中美洲和美国及加拿大南部大西洋流域的溪流和河流斜坡上最常见的蜻蜓之一。由于其高度可变的翅膀色素沉着,它们已成为研究性选择和种间行为干扰的模型系统。在这里,我们对雌性烟状红宝石斑的基因组进行了排序和组装。在初级装配(即主要假单倍型)中,98.8%由12个染色体假分子(2N = 22A + X)组成,共有75个支架,N50为120 Mbp, contig-N50为0.64 Mbp,具有较高的节肢动物BUSCO评分(C:97.6% [S:97.3%, D:0.3%], F:0.8%, M:1.6%)。然后,我们将我们的组装与蓝尾豆娘基因组(Ischnura elegans)的组装进行比较,这是迄今为止最完整的豆娘组装,以及最近发表的美国红斑豆娘组装(H. americana)。总的来说,这些资源使Hetaerina成为一个基因组激活属,用于进一步研究塑造生物多样性的生态和进化力量。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
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来源期刊
Journal of Heredity
Journal of Heredity 生物-遗传学
CiteScore
5.20
自引率
6.50%
发文量
63
审稿时长
6-12 weeks
期刊介绍: Over the last 100 years, the Journal of Heredity has established and maintained a tradition of scholarly excellence in the publication of genetics research. Virtually every major figure in the field has contributed to the journal. Established in 1903, Journal of Heredity covers organismal genetics across a wide range of disciplines and taxa. Articles include such rapidly advancing fields as conservation genetics of endangered species, population structure and phylogeography, molecular evolution and speciation, molecular genetics of disease resistance in plants and animals, genetic biodiversity and relevant computer programs.
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