Complete genome sequence of Enterococcus faecium strain AK_C_05 with potential characteristics applicable in livestock industry

IF 2.7 3区农林科学 Q1 AGRICULTURE, DAIRY & ANIMAL SCIENCE

Journal of Animal Science and Technology Pub Date : 2023-09-26 DOI:10.5187/jast.2023.e103

Hyunok Doo, Jin Ho Cho, Minho Song, Eun Sol Kim, Sheena Kim, Gi Beom Keum, Jinok Kwak, Sriniwas Pandey, Sumin Ryu, Yejin Choi, Juyoun Kang, Hyeun Bum Kim, Ju-Hoon Lee

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Abstract

The Enterococcus faecium (E. faecium) strain AK_C_05 was isolated from cheonggukjang, the Korean traditional food, collected from a local market in South Korea. In this report, we presented the complete genome sequence of E. faecium strain AK_C_05. The genome of E. faecium strain AK_C_05 genome consisted of one circular chromosome (2,691,319 bp) with a guanine + cytosine (GC) content of 38.3% and one circular plasmid (177,732 bp) with a guanine + cytosine (GC) content of 35.48%. The Annotation results revealed 2,827 protein-coding sequences (CDSs), 18 rRNAs, and 68 tRNA genes. It possesses genes, which encodes enzymes such as alpha-galactosidase (EC 3.2.1.22), beta-glucosidase (EC 3.2.1.21) and alpha-L-arabinofuranosidase (EC 3.2.1.55) enabling efficient utilization of carbohydrates. Based on Clusters of Orthologous Groups analysis, E. faecium strain AK_C_05 showed specialization in carbohydrate transport and metabolism indicating the ability to generate energy using a variety of carbohydrates.

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具有畜牧应用潜力的粪肠球菌AK_C_05全基因组序列

粪肠球菌</ italital>(& lt; italic> E。粪菌AK_C_05从韩国传统食品清国酱中分离得到，清国酱采自韩国当地市场。在这篇报道中，我们提出了<斜体>E的全基因组序列。faecium< / italic>应变AK_C_05。< italital>E。faecium< / italic>菌株AK_C_05基因组由1条环状染色体(2,691,319 bp)和1条环状质粒(177,732 bp)组成，其鸟嘌呤+胞嘧啶(GC)含量为38.3%。注释结果显示2827个蛋白质编码序列(CDSs)， 18个rnas和68个tRNA基因。它具有编码α -半乳糖苷酶(EC 3.2.1.22)、β -葡萄糖苷酶(EC 3.2.1.21)和α - l -阿拉伯糖醛酸苷酶(EC 3.2.1.55)等酶的基因，能够有效地利用碳水化合物。基于簇的同源基团分析，<斜体>faecium< / italic>菌株AK_C_05表现出碳水化合物运输和代谢的专门化，表明能够利用各种碳水化合物产生能量。

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来源期刊

Journal of Animal Science and Technology Agricultural and Biological Sciences-Food Science

CiteScore

4.50

自引率

8.70%

发文量

审稿时长

7 weeks

期刊介绍： Journal of Animal Science and Technology (J. Anim. Sci. Technol. or JAST) is a peer-reviewed, open access journal publishing original research, review articles and notes in all fields of animal science. Topics covered by the journal include: genetics and breeding, physiology, nutrition of monogastric animals, nutrition of ruminants, animal products (milk, meat, eggs and their by-products) and their processing, grasslands and roughages, livestock environment, animal biotechnology, animal behavior and welfare. Articles generally report research involving beef cattle, dairy cattle, pigs, companion animals, goats, horses, and sheep. However, studies involving other farm animals, aquatic and wildlife species, and laboratory animal species that address fundamental questions related to livestock and companion animal biology will also be considered for publication. The Journal of Animal Science and Technology (J. Anim. Technol. or JAST) has been the official journal of The Korean Society of Animal Science and Technology (KSAST) since 2000, formerly known as The Korean Journal of Animal Sciences (launched in 1956).