Complete chloroplast genome of Rorippa apetala Y.Y. Kim & B.U. Oh (Brassicales: Brassicaceae), a species endemic to the Korean Peninsula

IF 0.6 Q4 BIODIVERSITY CONSERVATION

Journal of Asia-Pacific Biodiversity Pub Date : 2023-11-04 DOI:10.1016/j.japb.2023.10.007

Young-Ho Ha, Ye-Rim Choi, Ara Cho, Tae-Hee Kim, Young-Soo Kim, Sang-Chul Kim, Hyuk-Jin Kim

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引用次数: 0

Abstract

Here, we successfully assembled the complete chloroplast genome of Rorippa apetala Y.Y. Kim & B.U. Oh, a species endemic to the Korean Peninsula. The chloroplast genome was 154,818 bp long and exhibited a typical quadripartite structure comprising large single-copy (83,847 bp) and small single-copy (18,023 bp) regions, and a pair of inverted repeats (26,474 bp each). A total of 129 genes were encoded, including 84 protein-coding genes, 37 tRNA genes, and 8 rRNA genes. Phylogenetic analysis based on the concatenated sequences of 78 protein-coding genes from 25 species revealed a close relationship between R. apetala and Rorippa indica (L.) Hiern, supported by full bootstrap value (100). Future studies employing more informative markers and a broader range of taxa will provide valuable insights into the biogeographical distribution of the genus Rorippa and offer a deeper understanding of the speciation process in R. apetala.

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朝鲜半岛特有物种 Rorippa apetala Y.Y. Kim & B.U. Oh（十字花科：十字花属）的完整叶绿体基因组

在此，我们成功地组装了朝鲜半岛特有物种 Rorippa apetala Y.Y. Kim & B.U. Oh 的完整叶绿体基因组。叶绿体基因组长 154,818 bp，呈典型的四方结构，包括大的单拷贝区（83,847 bp）和小的单拷贝区（18,023 bp），以及一对倒位重复区（各 26,474 bp）。共编码了 129 个基因，包括 84 个蛋白质编码基因、37 个 tRNA 基因和 8 个 rRNA 基因。基于来自 25 个物种的 78 个蛋白编码基因的序列的系统进化分析表明，R. apetala 与 Rorippa indica (L.) Hiern 之间的关系密切，并得到了全引导值（100）的支持。未来的研究将采用更多的信息标记和更广泛的分类群，这将为研究 Rorippa 属的生物地理分布提供有价值的见解，并加深对 R. apetala 的物种分化过程的理解。

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来源期刊

Journal of Asia-Pacific Biodiversity Agricultural and Biological Sciences-Insect Science

CiteScore

1.70

自引率

12.50%

发文量

审稿时长

27 days

期刊介绍： The Journal of Asia-Pacific Biodiversity (previous title was Journal of Korean Nature) is an official journal of National Science Museum of Korea (NSMK) and Korea National Arboretum (KNA). The scope of journal is wide and multidisciplinary that publishes original research papers, review articles, as well as conceptual, technical and methodological papers on all aspects of biological diversity-its description, analysis and conservation, and its application by humankind. This wide and multidisciplinary journal aims to provide both scientists and practitioners in conservation theory, policy and management with comprehensive and applicable information. However, papers should not be submitted that deal with microorganisms, except in invited paper. Articles that are focused on the social and economical aspects of biodiversity will be normally not accepted.