Complete genome sequence analysis of the multidrug resistant Aeromonas veronii isolated for the first time from stinging catfish (Shing fish) in Bangladesh.

IF 16.4 1区化学 Q1 CHEMISTRY, MULTIDISCIPLINARY

Accounts of Chemical Research Pub Date : 2023-09-30 eCollection Date: 2023-09-01 DOI:10.5455/javar.2023.j711

Mohummad Muklesur Rahman, Mohammad Sadekuzzaman, Md Asikur Rahman, Mahbubul Pratik Siddique, Mohammad Asir Uddin, Md Enamul Haque, Md Golam Azam Chowdhury, A K M Khasruzzaman, Md Tanvir Rahman, Muhammad Tofazzal Hossain, Md Alimul Islam

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Abstract

Objective: Whole genome sequencing (WGS) of Aeromonas veronii Alim_AV_1000 isolated from ulcerative lesions of Shing fish (stringing catfish; Heteropneustes fossilis) was performed during the outbreak year 2021.

Materials and methods: Using next-generation sequencing (Illumina) technology, WGS was accomplished, resulting in the sequencing, assembly, and analysis of the entire genome of the A. veronii strain. Moreover, the genomic features, virulence factors, antimicrobial resistome, and phylogenetic analysis for the molecular evolution of this strain were also examined.

Results: The genome size of the A. veronii Alim_AV_1000 strain was 4,494,515 bp, with an average G+C content of 58.87%. Annotation revealed the known transporters and genes linked to virulence, drug targets, and antimicrobial resistance.

Conclusion: The findings of the phylogenetic analysis revealed that the strain of the present study has a close relationship with the China strain TH0426 and strain B56. This study provides novel information on A. veronii isolated from Shing fish in Bangladesh.

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孟加拉国刺鱼中首次分离到的耐多药维罗氏气单胞菌全基因组序列分析。

目的:对盛鱼(串鲶)溃疡性病灶中维氏气单胞菌Alim_AV_1000进行全基因组测序;在2021年疫情暴发期间进行了异息肉(Heteropneustes化石)检查。材料和方法:利用新一代测序(Illumina)技术，完成了WGS，从而对韦氏芽孢杆菌菌株的整个基因组进行了测序、组装和分析。此外，还对该菌株的基因组特征、毒力因子、抗菌素抵抗组以及分子进化的系统发育分析进行了研究。结果:veronii Alim_AV_1000菌株基因组大小为4,494,515 bp，平均G+C含量为58.87%。注释揭示了已知的转运体和与毒力、药物靶点和抗菌素耐药性相关的基因。结论:系统发育分析结果表明，该菌株与中国株TH0426和B56亲缘关系较近。本研究提供了从孟加拉国盛鱼中分离得到的维罗氏单胞菌的新资料。

本文章由计算机程序翻译，如有差异，请以英文原文为准。

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来源期刊

Accounts of Chemical Research 化学-化学综合

CiteScore

31.40

自引率

1.10%

发文量

312

审稿时长

2 months

期刊介绍： Accounts of Chemical Research presents short, concise and critical articles offering easy-to-read overviews of basic research and applications in all areas of chemistry and biochemistry. These short reviews focus on research from the author’s own laboratory and are designed to teach the reader about a research project. In addition, Accounts of Chemical Research publishes commentaries that give an informed opinion on a current research problem. Special Issues online are devoted to a single topic of unusual activity and significance. Accounts of Chemical Research replaces the traditional article abstract with an article "Conspectus." These entries synopsize the research affording the reader a closer look at the content and significance of an article. Through this provision of a more detailed description of the article contents, the Conspectus enhances the article's discoverability by search engines and the exposure for the research.