A Visual Analytics System for Optimizing Communications in Massively Parallel Applications

Takanori Fujiwara, Preeti Malakar, K. Reda, V. Vishwanath, M. Papka, K. Ma
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引用次数: 14

Abstract

Current and future supercomputers have tens of thousands of compute nodes interconnected with high-dimensional networks and complex network topologies for improved performance. Application developers are required to write scalable parallel programs in order to achieve high throughput on these machines. Application performance is largely determined by efficient inter-process communication. A common way to analyze and optimize performance is through profiling parallel codes to identify communication bottlenecks. However, understanding gigabytes of profiled at a is not a trivial task. In this paper, we present a visual analytics system for identifying the scalability bottlenecks and improving the communication efficiency of massively parallel applications. Visualization methods used in this system are designed to comprehend large-scale and varied communication patterns on thousands of nodes in complex networks such as the 5D torus and the dragonfly. We also present efficient rerouting and remapping algorithms that can be coupled with our interactive visual analytics design for performance optimization. We demonstrate the utility of our system with several case studies using three benchmark applications on two leading supercomputers. The mapping suggestion from our system led to 38% improvement in hop-bytes for Mini AMR application on 4,096 MPI processes.
在大规模并行应用中优化通信的可视化分析系统
当前和未来的超级计算机有成千上万的计算节点,它们与高维网络和复杂的网络拓扑相互连接,以提高性能。为了在这些机器上实现高吞吐量,应用程序开发人员需要编写可伸缩的并行程序。应用程序的性能在很大程度上取决于有效的进程间通信。分析和优化性能的一种常用方法是通过分析并行代码来识别通信瓶颈。然而,一次了解千兆字节的概要文件并不是一项简单的任务。在本文中,我们提出了一个可视化分析系统,用于识别大规模并行应用程序的可扩展性瓶颈和提高通信效率。该系统采用的可视化方法旨在理解复杂网络(如5D环面和蜻蜓)中数千个节点上的大规模和不同的通信模式。我们还提出了有效的重新路由和重新映射算法,可以与我们的交互式可视化分析设计相结合,以实现性能优化。我们通过在两台领先的超级计算机上使用三个基准测试应用程序的几个案例研究来演示我们的系统的实用性。我们系统的映射建议使4096个MPI进程上的Mini AMR应用程序的跳位字节提高了38%。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
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