K. Berdimuratova, E. Shevtsova, A. Kairzhanova, B. Abdigulov, T. Karibayev, M. Berdikulov, S. Firsova, A. Shevtsov
{"title":"THE USE OF MOLECULAR GENETIC METHODS BASED ON MLVA ANALYSIS TO CONFIRM THE UNIQUENESS OF COLLECTION STRAINS OF BRUCELLA","authors":"K. Berdimuratova, E. Shevtsova, A. Kairzhanova, B. Abdigulov, T. Karibayev, M. Berdikulov, S. Firsova, A. Shevtsov","doi":"10.11134/btp.4.2022.3","DOIUrl":null,"url":null,"abstract":"Collections of pathogenic bacterial cultures are necessary for the storage of commercially valuable and typical strains for the purpose of patenting, production and testing of diagnostic and preventive drugs, as well as epidemiological strains isolated during the diagnosis of infectious diseases for detailed study and monitoring of changes in sanitary and epidemiological well-being. Collections are replenished with new unique strains, so it is very important that the characteristics of these strains should be carried out using highly discriminatory molecular genetic methods. This article presents the results of the evaluation of the genetic diversity of 36 collection strains of Brucella abortus and 57 strains of Brucella melitensis by the Multilocus variable number tandem repeat (VNTR) analysis (MLVA-16). Generic identification and absence of contamination by other bacterial species was confirmed by sequencing of the 16S rRNA gene. MLVA analysis allowed to establish contamination of 4 strains with different genotypes of brucella and to reveal that the deposited 36 strains isolated in 14 outbreaks of brucellosis are identical genotypes of the pathogen. Our studies have confirmed the presence of identical brucella strains in the collection. The use of MLVA-16 in testing isolated bacterial cultures from a single outbreak will allow differentiating unique strains for their subsequent deposition. Verification of deposited strains with MLVA characteristics with a detailed analysis of metadata about deposited strains will optimize the collection, in terms of preserving only unique strains, which will reduce economic costs and risks to ensure biological safety.","PeriodicalId":101644,"journal":{"name":"Eurasian Journal of Applied Biotechnology","volume":"25 1","pages":"0"},"PeriodicalIF":0.0000,"publicationDate":"2022-09-29","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"Eurasian Journal of Applied Biotechnology","FirstCategoryId":"1085","ListUrlMain":"https://doi.org/10.11134/btp.4.2022.3","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"","JCRName":"","Score":null,"Total":0}
引用次数: 0
Abstract
Collections of pathogenic bacterial cultures are necessary for the storage of commercially valuable and typical strains for the purpose of patenting, production and testing of diagnostic and preventive drugs, as well as epidemiological strains isolated during the diagnosis of infectious diseases for detailed study and monitoring of changes in sanitary and epidemiological well-being. Collections are replenished with new unique strains, so it is very important that the characteristics of these strains should be carried out using highly discriminatory molecular genetic methods. This article presents the results of the evaluation of the genetic diversity of 36 collection strains of Brucella abortus and 57 strains of Brucella melitensis by the Multilocus variable number tandem repeat (VNTR) analysis (MLVA-16). Generic identification and absence of contamination by other bacterial species was confirmed by sequencing of the 16S rRNA gene. MLVA analysis allowed to establish contamination of 4 strains with different genotypes of brucella and to reveal that the deposited 36 strains isolated in 14 outbreaks of brucellosis are identical genotypes of the pathogen. Our studies have confirmed the presence of identical brucella strains in the collection. The use of MLVA-16 in testing isolated bacterial cultures from a single outbreak will allow differentiating unique strains for their subsequent deposition. Verification of deposited strains with MLVA characteristics with a detailed analysis of metadata about deposited strains will optimize the collection, in terms of preserving only unique strains, which will reduce economic costs and risks to ensure biological safety.
必须收集致病性细菌培养物,以储存具有商业价值的典型菌株,以便为诊断和预防药物申请专利、生产和试验,以及在诊断传染病期间分离的流行病学菌株,以便详细研究和监测卫生和流行病学状况的变化。由于标本中有新的独特菌株,因此利用高度区分的分子遗传学方法对这些菌株进行特征分析是非常重要的。本文采用多位点可变数串联重复(Multilocus variable number tandem repeat, MLVA-16)分析方法对36株产布鲁氏菌和57株melitensis布鲁氏菌进行遗传多样性评价。通过对16S rRNA基因的测序,证实了该菌株的属性鉴定和未被其他细菌污染。MLVA分析确定了4株不同基因型的布鲁氏菌的污染情况,并揭示了在14次布鲁氏菌病暴发中分离的36株沉积菌株是相同的病原体基因型。我们的研究证实,在收集中存在相同的布鲁氏菌菌株。使用MLVA-16测试从单个暴发中分离的细菌培养物将允许区分独特的菌株,以便随后沉积。通过对沉积菌株元数据的详细分析,验证具有MLVA特征的沉积菌株,将优化收集,只保留独特的菌株,从而降低经济成本和风险,确保生物安全。