NEPTUNE Canada: Data integrity from the seafloor to your (Virtual) Door

R. Jenkyns
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The data commissioning phase, beginning even before an instrument enters the water, is a team effort that requires NEPTUNE Canada staff, the principal investigator (PI) and sometimes the manufacturer. For each instrument, there are three qualification stages. First and foremost, the systems team checks that instruments can be powered and perform within acceptable limits (e.g., no ground faults). Most instruments pass these requirements. The next level involves a daily review by NEPTUNE Canada staff of data from each instrument. The main objectives are to ensure raw data meets manufacturer specifications, sensor values are appropriately parsed and calibrated, and basic metadata are appropriately recorded in the database. Most issues at this stage can be relatively easily fixed. The third level focuses on the quality of the data itself. Pis are provided both raw data and derived data products since they are expected to be involved in the verification process. Various routines and visualizations plots are used to ensure values make sense. Anomalies and data gaps are noted and investigated. Instrument configurations may require numerous iterations to conquer challenges like interference between acoustic instruments and to better meet scientific objectives. Online tools (e.g., a screen to view and change configuration parameters) and specialized software (e.g., for interaction between instruments) have been created to support these adjustments. Data products are also being continually developed as a response to PI feedback and requests. As a result of this continual examination of the data, about 30 instruments have successfully passed commissioning phase. These instruments include Acoustic Doppler Current Profilers, Bottom Pressure Recorders, CTDs, fluorometers, a gravimeter, video cameras, hydrophones, methane and oxygen sensors. Post-launch, in addition to ongoing instrument commissioning and system maintenance, there were new operational challenges. The first challenge has been meeting the demands for data access. As of May 28, 2010, there have been over 20,000 data requests (1463 within the first two days) from over 1000 registered users via the Data Search tool in Oceans 2.0 (an online collaborative workspace for interacting with data and metadata and remotely controlling instruments). In response to user demand, more data product options continue to be offered. Web services are being developed as an alternative data access method. The general public has responded with an enormous appetite for video data, which has necessitated instructive tutorials for watching video data and explanations as to why cameras cannot be operated 24/7. A second challenge has been communicating important information to the end-user. Feedback is helping us determine how and what information to convey with regards to data interruptions/delays, instrument malfunctions, metadata and quality. Maintenance cruises present a third significant challenge, as there are significant metadata updates to make and new instruments to commission. Metadata must be quickly obtained, verified and entered, particularly for instruments that are already 'live'. A combination of technologies facilitate necessary communications with the crew at sea: live and archived video from ROPOS (including logs) via our website, Twitter, an installation blog, Skype and email. The first successful maintenance cruise occurred in May, and another deployment at Folger Shallow is scheduled for this summer. Going forward, there are further plans to enhance data integrity on the system, such as: developing automated quality control routines to detect anomalous data, exposing more metadata about instruments (history, documentation, annotations, quality flags, etc.), providing a notification system for events affecting data (e.g., instrument configuration changes and power outages), improving help resources and information within Oceans 2.0, increasing staff (two Scientific Data Specialists start in June). At the time of this conference, NEPTUNE Canada will be actively deploying more instruments including Wally II (an improved version of the crawler Wally), a repaired VPS, and Endeavour Ridge instrument platforms. 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引用次数: 8

Abstract

In December 2009, the NEPTUNE Canada ocean observatory successfully launched to the public, allowing anyone with an Internet connection access to observatory data. This event also officially marked a transition from infrastructure development to a fully operational observatory. Given that this occurred only a few months after the instrument platforms were deployed at four nodes, this transition was a considerable achievement. Notably, this quick turnaround presented a significant change for principal investigators who normally have much more time, often years, to conduct their science before releasing data to the public. In this paper, commissioning processes, operational challenges, and future plans are described as they relate to observatory data integrity. The data commissioning phase, beginning even before an instrument enters the water, is a team effort that requires NEPTUNE Canada staff, the principal investigator (PI) and sometimes the manufacturer. For each instrument, there are three qualification stages. First and foremost, the systems team checks that instruments can be powered and perform within acceptable limits (e.g., no ground faults). Most instruments pass these requirements. The next level involves a daily review by NEPTUNE Canada staff of data from each instrument. The main objectives are to ensure raw data meets manufacturer specifications, sensor values are appropriately parsed and calibrated, and basic metadata are appropriately recorded in the database. Most issues at this stage can be relatively easily fixed. The third level focuses on the quality of the data itself. Pis are provided both raw data and derived data products since they are expected to be involved in the verification process. Various routines and visualizations plots are used to ensure values make sense. Anomalies and data gaps are noted and investigated. Instrument configurations may require numerous iterations to conquer challenges like interference between acoustic instruments and to better meet scientific objectives. Online tools (e.g., a screen to view and change configuration parameters) and specialized software (e.g., for interaction between instruments) have been created to support these adjustments. Data products are also being continually developed as a response to PI feedback and requests. As a result of this continual examination of the data, about 30 instruments have successfully passed commissioning phase. These instruments include Acoustic Doppler Current Profilers, Bottom Pressure Recorders, CTDs, fluorometers, a gravimeter, video cameras, hydrophones, methane and oxygen sensors. Post-launch, in addition to ongoing instrument commissioning and system maintenance, there were new operational challenges. The first challenge has been meeting the demands for data access. As of May 28, 2010, there have been over 20,000 data requests (1463 within the first two days) from over 1000 registered users via the Data Search tool in Oceans 2.0 (an online collaborative workspace for interacting with data and metadata and remotely controlling instruments). In response to user demand, more data product options continue to be offered. Web services are being developed as an alternative data access method. The general public has responded with an enormous appetite for video data, which has necessitated instructive tutorials for watching video data and explanations as to why cameras cannot be operated 24/7. A second challenge has been communicating important information to the end-user. Feedback is helping us determine how and what information to convey with regards to data interruptions/delays, instrument malfunctions, metadata and quality. Maintenance cruises present a third significant challenge, as there are significant metadata updates to make and new instruments to commission. Metadata must be quickly obtained, verified and entered, particularly for instruments that are already 'live'. A combination of technologies facilitate necessary communications with the crew at sea: live and archived video from ROPOS (including logs) via our website, Twitter, an installation blog, Skype and email. The first successful maintenance cruise occurred in May, and another deployment at Folger Shallow is scheduled for this summer. Going forward, there are further plans to enhance data integrity on the system, such as: developing automated quality control routines to detect anomalous data, exposing more metadata about instruments (history, documentation, annotations, quality flags, etc.), providing a notification system for events affecting data (e.g., instrument configuration changes and power outages), improving help resources and information within Oceans 2.0, increasing staff (two Scientific Data Specialists start in June). At the time of this conference, NEPTUNE Canada will be actively deploying more instruments including Wally II (an improved version of the crawler Wally), a repaired VPS, and Endeavour Ridge instrument platforms. A new wave of commissioning begins.
NEPTUNE Canada:从海底到您的(虚拟)门的数据完整性
2009年12月,海王星加拿大海洋天文台成功向公众发射,允许任何有互联网连接的人访问天文台数据。这一事件也正式标志着从基础设施发展到一个全面运作的天文台的过渡。考虑到这仅仅发生在仪器平台部署到四个节点的几个月之后,这种转变是一项相当大的成就。值得注意的是,这种快速转变为主要研究人员带来了重大变化,他们通常有更多的时间(通常是几年)在向公众发布数据之前进行科学研究。本文描述了与天文台数据完整性相关的调试过程、操作挑战和未来计划。数据调试阶段甚至在仪器下水之前就开始了,这是一个团队工作,需要NEPTUNE Canada的工作人员、首席研究员(PI),有时还需要制造商。对于每种乐器,有三个鉴定阶段。首先,系统团队检查仪器是否可以供电并在可接受的范围内工作(例如,无接地故障)。大多数仪器都符合这些要求。下一级是由加拿大NEPTUNE工作人员每天审查每台仪器的数据。主要目标是确保原始数据符合制造商规格,传感器值得到适当的解析和校准,基本元数据被适当地记录在数据库中。这个阶段的大多数问题相对容易解决。第三个层次关注的是数据本身的质量。由于预期pi将参与验证过程,因此将向其提供原始数据和衍生数据产品。使用各种例程和可视化图来确保值是有意义的。注意和调查异常和数据差距。仪器配置可能需要多次迭代,以克服声学仪器之间的干扰等挑战,并更好地满足科学目标。已经创建了在线工具(例如,查看和更改配置参数的屏幕)和专门的软件(例如,用于仪器之间的交互)来支持这些调整。数据产品也在不断开发中,以回应个人资料项目的反馈和要求。通过对数据的持续检查,大约有30台仪器成功地通过了调试阶段。这些仪器包括声学多普勒电流分析器,底部压力记录仪,ctd,荧光计,重力仪,摄像机,水听器,甲烷和氧气传感器。发射后,除了正在进行的仪器调试和系统维护之外,还有新的操作挑战。第一个挑战是满足对数据访问的需求。截至2010年5月28日,通过Oceans 2.0(用于与数据、元数据和远程控制仪器交互的在线协作工作空间)中的数据搜索工具,已经有超过1000个注册用户发出了超过20,000个数据请求(头两天内有1463个)。为响应用户需求,不断提供更多的数据产品选择。正在开发Web服务作为一种可选的数据访问方法。公众对视频数据有着巨大的需求,因此有必要提供观看视频数据的指导性教程,并解释为什么摄像机不能全天候运行。第二个挑战是向最终用户传达重要信息。反馈帮助我们确定如何以及在数据中断/延迟、仪器故障、元数据和质量方面传达什么信息。维护巡航提出了第三个重大挑战,因为需要进行大量的元数据更新,并且需要调试新的仪器。必须快速获取、验证和输入元数据,特别是对于已经“运行”的仪器。通过我们的网站、Twitter、安装博客、Skype和电子邮件,各种技术的结合促进了与海上船员的必要通信:来自ROPOS的实时和存档视频(包括日志)。第一次成功的维护巡航发生在5月份,今年夏天将在Folger Shallow进行另一次部署。展望未来,我们将进一步计划加强系统的数据完整性,例如:开发自动化质量控制程序来检测异常数据,暴露更多关于仪器的元数据(历史、文档、注释、质量标志等),为影响数据的事件提供通知系统(例如,仪器配置更改和停电),在Oceans 2.0中改进帮助资源和信息,增加员工(两名科学数据专家将于6月开始工作)。在这次会议期间,NEPTUNE Canada将积极部署更多的仪器,包括Wally II(履带式Wally的改进版本),修复的VPS和奋进岭仪器平台。 新的试运行浪潮开始了。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
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