Effect of solvent viscosity on the activation barrier of hydrogen tunneling in the lipoxygenase reaction

IF 3.8 3区 生物学 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY
Luis Guevara , Melissa Gouge , Amanda Ohler , S. Gage Hill , Soham Patel , Adam R. Offenbacher
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Abstract

Hydrogen tunneling in enzyme reactions has played an important role in linking protein thermal motions to the chemical steps of catalysis. Lipoxygenases (LOXs) have served as model systems for such reactions, showcasing deep hydrogen tunneling mechanisms associated with enzymatic C–H bond cleavage from polyunsaturated fatty acids. Here, we examined the effect of solvent viscosity on the protein thermal motions associated with LOX catalysis using trehalose and glucose as viscogens. Kinetic analysis of the reaction of the paradigm plant orthologue, soybean lipoxygenase (SLO), with linoleic acid revealed no effect on the first-order rate constants, kcat, or activation energy, Ea. Further studies of SLO active site mutants displaying varying Eas, which have been used to probe catalytically relevant motions, likewise provided no evidence for viscogen-dependent motions. Kinetic analyses were extended to a representative fungal LOX from M. oryzae, MoLOX, and a human LOX, 15-LOX-2. While MoLOX behaved similarly to SLO, we show that viscogens inhibit 15-LOX-2 activity. The latter implicates viscogen sensitive, conformational motions in animal LOX reactions. The data provide insight into the role of water hydration layers in facilitating hydrogen (quantum) tunneling in LOX.

Abstract Image

溶剂粘度对脂氧合酶反应中氢通道激活屏障的影响。
酶反应中的氢隧道在将蛋白质的热运动与催化的化学步骤联系起来方面发挥了重要作用。脂氧合酶(LOX)已成为此类反应的模型系统,显示了与多不饱和脂肪酸的酶促C-H键切割相关的深氢隧道机制。在这里,我们使用海藻糖和葡萄糖作为粘度原,研究了溶剂粘度对与LOX催化相关的蛋白质热运动的影响。对典型植物同源物大豆脂氧合酶(SLO)与亚油酸反应的动力学分析显示,对一阶速率常数kcat或活化能Ea没有影响。对显示不同Eas的SLO活性位点突变体的进一步研究,已用于探测催化相关的运动,同样没有提供粘原依赖性运动的证据。动力学分析扩展到米曲霉的代表性真菌LOX,MoLOX和人LOX,15-LOX-2。虽然MoLOX的表现与SLO相似,但我们发现粘原抑制15-LOX-2的活性。后者暗示了动物LOX反应中粘原敏感的构象运动。这些数据提供了对水合层在促进LOX中氢(量子)隧穿中的作用的深入了解。
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来源期刊
Archives of biochemistry and biophysics
Archives of biochemistry and biophysics 生物-生化与分子生物学
CiteScore
7.40
自引率
0.00%
发文量
245
审稿时长
26 days
期刊介绍: Archives of Biochemistry and Biophysics publishes quality original articles and reviews in the developing areas of biochemistry and biophysics. Research Areas Include: • Enzyme and protein structure, function, regulation. Folding, turnover, and post-translational processing • Biological oxidations, free radical reactions, redox signaling, oxygenases, P450 reactions • Signal transduction, receptors, membrane transport, intracellular signals. Cellular and integrated metabolism.
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