Exclusion of previously described variant in LTBP2 for primary glaucoma in Australian Burmese cats

IF 1.8 3区 生物学 Q2 AGRICULTURE, DAIRY & ANIMAL SCIENCE
Animal genetics Pub Date : 2023-07-27 DOI:10.1111/age.13346
J. Ranocchia, W. Irving, B. Haase
{"title":"Exclusion of previously described variant in LTBP2 for primary glaucoma in Australian Burmese cats","authors":"J. Ranocchia,&nbsp;W. Irving,&nbsp;B. Haase","doi":"10.1111/age.13346","DOIUrl":null,"url":null,"abstract":"<p>Glaucoma is a diverse group of progressive neurodegenerative eye disorders that can lead to irreversible blindness (Davis et al., <span>2016</span>; Maggio, <span>2015</span>; Weinreb et al., <span>2014</span>). Based on the underlying aetiology, glaucoma can be classified as either primary or secondary and within primary further categorised as open or closed angle. Both forms result in an increased intraocular pressure (IOP), and while secondary glaucoma is characterised by an increase in IOP due to pathological process such as inflammation, primary glaucoma lacks these distinguishable pathologies. Being one of the most common heritable disorders in humans, 112 genetic loci and variants in 74 genes have been identified as being associated with primary glaucoma to date (Gao et al., <span>2018</span>; Khawaja et al., <span>2018</span>; MacGregor et al., <span>2018</span>; Wang et al., <span>2017</span>, <span>2018</span>). While less common, primary glaucoma has been described in dogs and cats (Hampson et al., <span>2002</span>; Martin &amp; Wyman, <span>1978</span>; Miller &amp; Bentley, <span>2015</span>; Schallek et al., <span>2012</span>), and, although rarely observed in cats, a breed predisposition has been reported in Burmese, Siamese, and Persian cats (Dietrich, <span>2005</span>; Glaze, <span>2005</span>).</p><p>To date, only one variant in <i>the Latent Transforming Growth Factor-β Binding Protein 2</i> (<i>LTBP2</i>) gene has been associated with primary glaucoma in domestic cats (Kuehn et al., <span>2016</span>). The aim of this study was to assess for the presence of the previously described variant in Australian Burmese cats clinically diagnosed with primary glaucoma.</p><p>EDTA-stabilised whole blood from 10 Australian Burmese cats diagnosed with primary glaucoma at a specialist animal eye hospital in Sydney were collected and genomic DNA isolated using a standard phenol–chloroform extraction method. Genotypes for the <i>LTBP2</i> variant were determined by PCR and direct sequencing of PCR products as described before (Gao et al., <span>2018</span>). Sequence data were analysed using Sequencher 5.4.6 (GeneCodes) and compared to the feline <i>LTBP2</i> reference sequence (XM_023255858.2) according to FelCat9.</p><p>Sequence data analysis demonstrated that none of the 10 affected Burmese cats carried the previously described 4-bp insertion in the <i>LTBP2</i> gene (g.121929604_121929607insCCTC; according to FelCat9) and that all cases were homozygous for the wild-type allele at this position. As none of the cases investigated carried the previously described variant in <i>LTBP2</i> (Kuehn et al., <span>2016</span>), this variant can be excluded from being responsible for primary glaucoma in the investigated Burmese cats. Considering that the previously described variant in <i>LTBP</i>2 has been identified in Siamese cats, another yet unknown genetic variant may be responsible for the observed phenotype in the Burmese cat. While <i>LTBP2</i> still represents a good candidate gene for further investigation, the genetically heterogeneous nature of primary glaucoma in humans and dogs suggests that a variant in a different gene might be associated with primary glaucoma in Burmese cats (Ali et al., <span>2009</span>; Gao et al., <span>2018</span>; Khawaja et al., <span>2018</span>; Kuchtey et al., <span>2011</span>, <span>2013</span>; MacGregor et al., <span>2018</span>; Suri et al., <span>2018</span>; Zukerman et al., <span>2021</span>). As it was not possible to obtain pedigree information for the cases investigated, the exact mode of inheritance of primary glaucoma in the Australian Burmese cat population is yet to be determined. Considering that primary glaucoma in humans commonly follows an autosomal recessive inheritance pattern and that similar findings have been made in the dog, it is likely that this will also be the case for the cat (Asefa et al., <span>2019</span>; Cascella et al., <span>2015</span>; Kuchtey et al., <span>2011</span>, <span>2013</span>; Sarfarazi et al., <span>2003</span>; Zukerman et al., <span>2021</span>).</p><p>The authors declare that they have no competing interests.</p>","PeriodicalId":7905,"journal":{"name":"Animal genetics","volume":"54 5","pages":"657-658"},"PeriodicalIF":1.8000,"publicationDate":"2023-07-27","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://onlinelibrary.wiley.com/doi/epdf/10.1111/age.13346","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"Animal genetics","FirstCategoryId":"99","ListUrlMain":"https://onlinelibrary.wiley.com/doi/10.1111/age.13346","RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q2","JCRName":"AGRICULTURE, DAIRY & ANIMAL SCIENCE","Score":null,"Total":0}
引用次数: 0

Abstract

Glaucoma is a diverse group of progressive neurodegenerative eye disorders that can lead to irreversible blindness (Davis et al., 2016; Maggio, 2015; Weinreb et al., 2014). Based on the underlying aetiology, glaucoma can be classified as either primary or secondary and within primary further categorised as open or closed angle. Both forms result in an increased intraocular pressure (IOP), and while secondary glaucoma is characterised by an increase in IOP due to pathological process such as inflammation, primary glaucoma lacks these distinguishable pathologies. Being one of the most common heritable disorders in humans, 112 genetic loci and variants in 74 genes have been identified as being associated with primary glaucoma to date (Gao et al., 2018; Khawaja et al., 2018; MacGregor et al., 2018; Wang et al., 2017, 2018). While less common, primary glaucoma has been described in dogs and cats (Hampson et al., 2002; Martin & Wyman, 1978; Miller & Bentley, 2015; Schallek et al., 2012), and, although rarely observed in cats, a breed predisposition has been reported in Burmese, Siamese, and Persian cats (Dietrich, 2005; Glaze, 2005).

To date, only one variant in the Latent Transforming Growth Factor-β Binding Protein 2 (LTBP2) gene has been associated with primary glaucoma in domestic cats (Kuehn et al., 2016). The aim of this study was to assess for the presence of the previously described variant in Australian Burmese cats clinically diagnosed with primary glaucoma.

EDTA-stabilised whole blood from 10 Australian Burmese cats diagnosed with primary glaucoma at a specialist animal eye hospital in Sydney were collected and genomic DNA isolated using a standard phenol–chloroform extraction method. Genotypes for the LTBP2 variant were determined by PCR and direct sequencing of PCR products as described before (Gao et al., 2018). Sequence data were analysed using Sequencher 5.4.6 (GeneCodes) and compared to the feline LTBP2 reference sequence (XM_023255858.2) according to FelCat9.

Sequence data analysis demonstrated that none of the 10 affected Burmese cats carried the previously described 4-bp insertion in the LTBP2 gene (g.121929604_121929607insCCTC; according to FelCat9) and that all cases were homozygous for the wild-type allele at this position. As none of the cases investigated carried the previously described variant in LTBP2 (Kuehn et al., 2016), this variant can be excluded from being responsible for primary glaucoma in the investigated Burmese cats. Considering that the previously described variant in LTBP2 has been identified in Siamese cats, another yet unknown genetic variant may be responsible for the observed phenotype in the Burmese cat. While LTBP2 still represents a good candidate gene for further investigation, the genetically heterogeneous nature of primary glaucoma in humans and dogs suggests that a variant in a different gene might be associated with primary glaucoma in Burmese cats (Ali et al., 2009; Gao et al., 2018; Khawaja et al., 2018; Kuchtey et al., 2011, 2013; MacGregor et al., 2018; Suri et al., 2018; Zukerman et al., 2021). As it was not possible to obtain pedigree information for the cases investigated, the exact mode of inheritance of primary glaucoma in the Australian Burmese cat population is yet to be determined. Considering that primary glaucoma in humans commonly follows an autosomal recessive inheritance pattern and that similar findings have been made in the dog, it is likely that this will also be the case for the cat (Asefa et al., 2019; Cascella et al., 2015; Kuchtey et al., 2011, 2013; Sarfarazi et al., 2003; Zukerman et al., 2021).

The authors declare that they have no competing interests.

排除了先前描述的澳大利亚缅甸猫原发性青光眼LTBP2变异
青光眼是一种进行性神经退行性眼部疾病,可导致不可逆失明(Davis et al., 2016;Maggio, 2015;Weinreb et al., 2014)。根据潜在的病因,青光眼可分为原发性和继发性,在原发性中进一步分为开角和闭角。两种形式的青光眼都会导致眼压升高,继发性青光眼的特点是由于炎症等病理过程导致眼压升高,而原发性青光眼缺乏这些可区分的病理。青光眼是人类最常见的遗传性疾病之一,迄今为止已鉴定出74个基因中的112个遗传位点和变异与原发性青光眼相关(Gao等人,2018;Khawaja等人,2018;MacGregor et al., 2018;Wang et al., 2017,2018)。虽然不太常见,但原发性青光眼在狗和猫中也有报道(Hampson等,2002;马丁,奥,1978;米勒,宾利,2015;Schallek et al., 2012),而且,尽管很少在猫中观察到,但在缅甸猫、暹罗猫和波斯猫中也有品种易感性的报道(Dietrich, 2005;釉,2005)。迄今为止,只有潜伏转化生长因子-β结合蛋白2 (LTBP2)基因的一种变异与家猫的原发性青光眼有关(Kuehn et al., 2016)。本研究的目的是评估在临床诊断为原发性青光眼的澳大利亚缅甸猫中是否存在先前描述的变异。在悉尼一家专业动物眼科医院收集了10只被诊断为原发性青光眼的澳大利亚缅甸猫的edta稳定全血,并使用标准的苯酚-氯仿提取方法分离基因组DNA。LTBP2变异的基因型通过PCR和PCR产物的直接测序确定(Gao et al., 2018)。序列数据使用Sequencher 5.4.6 (GeneCodes)进行分析,并根据FelCat9与猫LTBP2参考序列(XM_023255858.2)进行比较。序列数据分析表明,10只受影响的缅甸猫中没有一只携带先前描述的LTBP2基因4-bp插入(g.121929604_121929607insCCTC;根据FelCat9),所有病例在该位置的野生型等位基因均为纯合的。由于所调查的病例均未携带先前描述的LTBP2变异(Kuehn et al., 2016),因此可以排除该变异与所调查缅甸猫原发性青光眼的关系。考虑到先前描述的LTBP2变异已在暹罗猫中被发现,另一种未知的遗传变异可能是导致缅甸猫中观察到的表型的原因。虽然LTBP2仍然是一个值得进一步研究的良好候选基因,但人类和狗原发性青光眼的遗传异质性表明,不同基因的变异可能与缅甸猫的原发性青光眼有关(Ali等,2009;Gao et al., 2018;Khawaja等人,2018;Kuchtey et al., 2011, 2013;MacGregor et al., 2018;Suri et al., 2018;Zukerman et al., 2021)。由于无法获得所调查病例的谱系信息,澳大利亚缅甸猫群体中原发性青光眼的确切遗传模式尚未确定。考虑到人类原发性青光眼通常遵循常染色体隐性遗传模式,并且在狗身上也有类似的发现,因此猫的情况很可能也是如此(Asefa等人,2019;Cascella et al., 2015;Kuchtey et al., 2011, 2013;Sarfarazi et al., 2003;Zukerman et al., 2021)。作者宣称他们没有竞争利益。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
求助全文
约1分钟内获得全文 求助全文
来源期刊
Animal genetics
Animal genetics 生物-奶制品与动物科学
CiteScore
4.60
自引率
4.20%
发文量
115
审稿时长
5 months
期刊介绍: Animal Genetics reports frontline research on immunogenetics, molecular genetics and functional genomics of economically important and domesticated animals. Publications include the study of variability at gene and protein levels, mapping of genes, traits and QTLs, associations between genes and traits, genetic diversity, and characterization of gene or protein expression and control related to phenotypic or genetic variation. The journal publishes full-length articles, short communications and brief notes, as well as commissioned and submitted mini-reviews on issues of interest to Animal Genetics readers.
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
确定
请完成安全验证×
copy
已复制链接
快去分享给好友吧!
我知道了
右上角分享
点击右上角分享
0
联系我们:info@booksci.cn Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。 Copyright © 2023 布克学术 All rights reserved.
京ICP备2023020795号-1
ghs 京公网安备 11010802042870号
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术官方微信