Complete genome sequence of pectin-degrading Flavobacteriaceae bacterium GSB9

IF 16.4 1区化学 Q1 CHEMISTRY, MULTIDISCIPLINARY

Accounts of Chemical Research Pub Date : 2023-10-01 DOI:10.1016/j.margen.2023.101047

Binna Lee , Jeong Ah. Kim , Yunjon Han, Jae Jun Song, Jong Hyun Choi, Ji Young Kang

引用次数: 0

Abstract

Pectic oligosaccharides, which are considered to be potential prebiotics, may be generated by pectin-degrading enzymes. Here, we report the complete genome sequence of the pectin-degrading marine bacterium, Flavobacteriaceae bacterium GSB9, which was isolated from seawater of South Korea. The complete genome sequence revealed that the chromosome was 3,630,376 bp in size, had a G + C content of 36.6 mol%, and was predicted to encode 3100 protein-coding sequences (CDSs), 40 tRNAs, and six 16S–23S-5S rRNAs. Genome sequence analysis revealed that this strain possesses multiple genes predicted to encode pectin-degrading enzymes. Our analysis may facilitate the future application of this strain against pectin in various industries.

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果胶降解黄杆菌科细菌GSB9的全基因组序列

果胶低聚糖被认为是潜在的益生元，可能是由果胶降解酶产生的。在这里，我们报道了从韩国海水中分离到的果胶降解海洋细菌黄杆菌科细菌GSB9的全基因组序列。全基因组测序结果显示，该染色体全长3630376 bp, G + C含量为36.6 mol%，编码3100个蛋白编码序列(CDSs)、40个trna和6个16S-23S-5S rnas。基因组序列分析显示，该菌株具有多个预测编码果胶降解酶的基因。我们的分析可能有助于该菌株在不同工业中对果胶的应用。

本文章由计算机程序翻译，如有差异，请以英文原文为准。

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来源期刊

Accounts of Chemical Research 化学-化学综合

CiteScore

31.40

自引率

1.10%

发文量

312

审稿时长

2 months

期刊介绍： Accounts of Chemical Research presents short, concise and critical articles offering easy-to-read overviews of basic research and applications in all areas of chemistry and biochemistry. These short reviews focus on research from the author’s own laboratory and are designed to teach the reader about a research project. In addition, Accounts of Chemical Research publishes commentaries that give an informed opinion on a current research problem. Special Issues online are devoted to a single topic of unusual activity and significance. Accounts of Chemical Research replaces the traditional article abstract with an article "Conspectus." These entries synopsize the research affording the reader a closer look at the content and significance of an article. Through this provision of a more detailed description of the article contents, the Conspectus enhances the article's discoverability by search engines and the exposure for the research.