用稀疏混合回归的协变量对流式细胞术测量的细胞群进行建模。

IF 1.3 4区 数学 Q2 STATISTICS & PROBABILITY
By Sangwon Hyun, Mattias Rolf Cape, Francois Ribalet, Jacob Bien
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引用次数: 4

摘要

海洋中充满了被称为浮游植物的微小微藻,它们的光合作用相当于陆地上所有植物的光合作用总和。我们预测它们对海洋变暖的反应的能力依赖于了解浮游植物种群的动态是如何受到环境条件变化的影响的。流式细胞术是研究浮游植物动力学的一种强有力的技术,它可以每秒测量数千个单个细胞的光学特性。今天,海洋学家能够在移动的船上实时收集流式细胞仪数据,为他们提供数千公里范围内浮游植物分布的精细分辨率。目前的挑战之一是了解这些小的和大的变化与环境条件的关系,如营养物质的可用性、温度、光线和洋流。在本文中,我们提出了一种新的稀疏混合多元回归模型来估计随时间变化的浮游植物亚群,同时确定预测这些亚群观测变化的特定环境协变量。我们利用2017年春季在东北太平洋进行的海洋巡航收集的合成数据和实际观测数据证明了该方法的有效性和可解释性。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
MODELING CELL POPULATIONS MEASURED BY FLOW CYTOMETRY WITH COVARIATES USING SPARSE MIXTURE OF REGRESSIONS.

The ocean is filled with microscopic microalgae, called phytoplankton, which together are responsible for as much photosynthesis as all plants on land combined. Our ability to predict their response to the warming ocean relies on understanding how the dynamics of phytoplankton populations is influenced by changes in environmental conditions. One powerful technique to study the dynamics of phytoplankton is flow cytometry which measures the optical properties of thousands of individual cells per second. Today, oceanographers are able to collect flow cytometry data in real time onboard a moving ship, providing them with fine-scale resolution of the distribution of phytoplankton across thousands of kilometers. One of the current challenges is to understand how these small- and large-scale variations relate to environmental conditions, such as nutrient availability, temperature, light and ocean currents. In this paper we propose a novel sparse mixture of multivariate regressions model to estimate the time-varying phytoplankton subpopulations while simultaneously identifying the specific environmental covariates that are predictive of the observed changes to these subpopulations. We demonstrate the usefulness and interpretability of the approach using both synthetic data and real observations collected on an oceanographic cruise conducted in the northeast Pacific in the spring of 2017.

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来源期刊
Annals of Applied Statistics
Annals of Applied Statistics 社会科学-统计学与概率论
CiteScore
3.10
自引率
5.60%
发文量
131
审稿时长
6-12 weeks
期刊介绍: Statistical research spans an enormous range from direct subject-matter collaborations to pure mathematical theory. The Annals of Applied Statistics, the newest journal from the IMS, is aimed at papers in the applied half of this range. Published quarterly in both print and electronic form, our goal is to provide a timely and unified forum for all areas of applied statistics.
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