利用基于网络的生物信息学方法鉴定COVID-19与吸烟之间的分子生物标志物。

IF 2.3 Q3 BIOCHEMICAL RESEARCH METHODS
Md Anisur Rahman, Md Al Amin, Most Nilufa Yeasmin, Md Zahidul Islam
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引用次数: 0

摘要

COVID-19冠状病毒主要影响肺部,是SARS-CoV-2疾病的来源。根据“吸烟与COVID-19:范围审查”,约32%的吸烟者在入院时患有严重的COVID-19肺炎,15%的非吸烟者患有这种COVID-19肺炎。通过比较COVID-19患者、吸烟者和健康对照者的基因转录组数据集的表达,我们能够确定每组中哪些基因表达不同。根据我们的分析,总共有37种失调基因在COVID-19患者和吸烟者中很常见。我们运用生物信息学的蛋白质-蛋白质相互作用、枢纽-蛋白质相互作用、药物-蛋白质相互作用、tf-基因相互作用、基因- mirna相互作用等重要方法进行分析,深入了解吸烟与COVID-19严重程度之间的关系。我们还分析了pathway和Gene Ontology,其中5个重要的信号通路与先前的文献进行了验证。另外,我们验证了7个hub-protein,最后,我们用之前的研究共验证了7种药物。
本文章由计算机程序翻译,如有差异,请以英文原文为准。

Molecular Biomarker Identification Using a Network-Based Bioinformatics Approach That Links COVID-19 With Smoking.

Molecular Biomarker Identification Using a Network-Based Bioinformatics Approach That Links COVID-19 With Smoking.

Molecular Biomarker Identification Using a Network-Based Bioinformatics Approach That Links COVID-19 With Smoking.

Molecular Biomarker Identification Using a Network-Based Bioinformatics Approach That Links COVID-19 With Smoking.

The COVID-19 coronavirus, which primarily affects the lungs, is the source of the disease known as SARS-CoV-2. According to "Smoking and COVID-19: a scoping review," about 32% of smokers had a severe case of COVID-19 pneumonia at their admission time and 15% of non-smokers had this case of COVID-19 pneumonia. We were able to determine which genes were expressed differently in each group by comparing the expression of gene transcriptomic datasets of COVID-19 patients, smokers, and healthy controls. In all, 37 dysregulated genes are common in COVID-19 patients and smokers, according to our analysis. We have applied all important methods namely protein-protein interaction, hub-protein interaction, drug-protein interaction, tf-gene interaction, and gene-MiRNA interaction of bioinformatics to analyze to understand deeply the connection between both smoking and COVID-19 severity. We have also analyzed Pathways and Gene Ontology where 5 significant signaling pathways were validated with previous literature. Also, we verified 7 hub-proteins, and finally, we validated a total of 7 drugs with the previous study.

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来源期刊
Bioinformatics and Biology Insights
Bioinformatics and Biology Insights BIOCHEMICAL RESEARCH METHODS-
CiteScore
6.80
自引率
1.70%
发文量
36
审稿时长
8 weeks
期刊介绍: Bioinformatics and Biology Insights is an open access, peer-reviewed journal that considers articles on bioinformatics methods and their applications which must pertain to biological insights. All papers should be easily amenable to biologists and as such help bridge the gap between theories and applications.
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