人β b2结晶蛋白的蛋白-蛋白结合特性。

IF 2.8 4区 生物学 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY
Proteins-Structure Function and Bioinformatics Pub Date : 2025-08-01 Epub Date: 2023-07-17 DOI:10.1002/prot.26547
José-Luis Velasco-Bolom, Laura Domínguez
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引用次数: 0

摘要

蛋白-蛋白关联事件涉及许多生理和病理过程。白内障是一种表现为晶状体蛋白聚集的病理。β-晶体蛋白在晶状体中占有很高的比例。因此,对晶体蛋白二聚化特性的结构研究可以揭示蛋白质聚集的第一阶段。在目前的工作中,我们通过广泛的粗粒度分子动力学(CG-MD)和马尔可夫状态分析来研究人类β b2结晶蛋白的蛋白-蛋白关联谱。有趣的是,我们的结果清楚地显示了wt-HβB2C和脱酰胺体系之间蛋白质二聚化动力学的重要变化。这两种体系呈二聚构象。然而,结合力和解离率是非常不同的。结果表明,与wt- HβB2C相比,脱酰胺体系缔合速度更快,解离速度更慢。脱酰胺系统处于稍微开放的构象中,希腊键基序折叠良好,这表明蛋白质的完全展开不需要聚集。我们的研究结果描述了由于翻译后修饰引起的结晶蛋白聚集的第一阶段。
本文章由计算机程序翻译,如有差异,请以英文原文为准。

Protein-protein association properties of human βB2-crystallins.

Protein-protein association properties of human βB2-crystallins.

Protein-protein association properties of human βB2-crystallins.

Protein-protein association properties of human βB2-crystallins.

Protein-protein association events are involved in many physiological and pathological processes. Cataract disease is a pathology that manifests protein aggregation of crystallins. β-Crystallins are present in a high proportion in the eye lens. Therefore, the structural study of the dimerization properties of crystallins can shed light on the first stages of protein aggregation. In the present work, we examine the protein-protein association profiles of the human βB2-crystallin by employing extensive coarse-grained molecular dynamics (CG-MD) and the Markov state analysis. Interestingly, our results clearly show important changes in the protein dimerization kinetics between wt-HβB2C and the deamidated systems. The two systems show dimeric conformations. However, the association and dissociation rates are very different. Our results show that the deamidated system can associate faster and dissociate slower than the wt- HβB2C. The deamidated system is in a slightly opened conformation with the Greek-key motifs well folded, suggesting that a complete unfolding of the protein is not required for aggregation. Our results describe the first stages of crystallin aggregation due to post-translational modifications.

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来源期刊
Proteins-Structure Function and Bioinformatics
Proteins-Structure Function and Bioinformatics 生物-生化与分子生物学
CiteScore
5.90
自引率
3.40%
发文量
172
审稿时长
3 months
期刊介绍: PROTEINS : Structure, Function, and Bioinformatics publishes original reports of significant experimental and analytic research in all areas of protein research: structure, function, computation, genetics, and design. The journal encourages reports that present new experimental or computational approaches for interpreting and understanding data from biophysical chemistry, structural studies of proteins and macromolecular assemblies, alterations of protein structure and function engineered through techniques of molecular biology and genetics, functional analyses under physiologic conditions, as well as the interactions of proteins with receptors, nucleic acids, or other specific ligands or substrates. Research in protein and peptide biochemistry directed toward synthesizing or characterizing molecules that simulate aspects of the activity of proteins, or that act as inhibitors of protein function, is also within the scope of PROTEINS. In addition to full-length reports, short communications (usually not more than 4 printed pages) and prediction reports are welcome. Reviews are typically by invitation; authors are encouraged to submit proposed topics for consideration.
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