Tammi R Duncan, Margaret Werner-Washburne, Diana E Northup
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LT PC were incubated for 10-11 years to identify potential chemolithoheterotrophic cultures able to survive in nutrient-limited conditions. ST PC were incubated for 1-3 days to identify a broader diversity of cave isolates. A total of 170 LT and ST cultures,18 pure and 152 mixed, were collected and used to classify siderophore production and type and to identify siderophore producers. Siderophore production was slow to develop (>10 days) in LT cultures with a greater number of weak siderophore producers in comparison to the ST cultures that produced siderophores in <10 days, with a majority of strong siderophore producers. Overall, 64% of the total cultures were siderophore producers, which the majority preferred hydroxamate siderophores. Siderophore producers were classified into <i>Proteobacteria</i> (<i>Alpha</i>-, <i>Beta</i>-, or <i>Gamma-</i>), <i>Actinobacteria</i>, <i>Bacteroidetes</i>, and <i>Firmicutes</i> phyla using 16S rRNA gene sequencing. 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引用次数: 5
摘要
铁载体是微生物产生的铁螯合剂。它们是微生物生存所必需的,但它们在洞穴微生物中的存在和功能尚未得到广泛研究。洞穴环境是营养有限的,以前的证据表明碳酸盐洞穴中使用铁载体。我们推测,铁载体可能是洞穴中获取铁等关键营养物质的一种机制。从美国NM Carlsbad Caverns National Park (CCNP)的Lechuguilla和Spider caves中接种锰铁矿床(FMD)和碳酸盐次生矿物的长期亲本培养物(LT PC)或短期亲本培养物(ST PC)中收集洞穴细菌。LT PC孵育10-11年,以确定能够在营养有限的条件下存活的潜在的化质异养培养物。ST PC孵育1-3天,以确定更广泛的洞穴分离株多样性。共收集了170个LT和ST培养物,其中18个为纯培养物,152个为混合培养物,用于对铁载体的产生和类型进行分类,并鉴定了铁载体的产生者。利用16S rRNA基因测序,与在变形菌门(α -、β -或γ -)、放线菌门、拟杆菌门和厚壁菌门产生铁载体的ST培养物相比,在LT培养物中产生弱铁载体的速度较慢(>10天)。我们的研究支持了我们的假设,即洞穴细菌有能力在地下产生铁载体,以获得临界铁。
DIVERSITY OF SIDEROPHORE-PRODUCING BACTERIAL CULTURES FROM CARLSBAD CAVERNS NATIONAL PARK (CCNP) CAVES, CARLSBAD, NEW MEXICO.
Siderophores are microbially-produced ferric iron chelators. They are essential for microbial survival, but their presence and function for cave microorganisms have not been extensively studied. Cave environments are nutrient-limited and previous evidence suggests siderophore usage in carbonate caves. We hypothesize that siderophores are likely used as a mechanism in caves to obtain critical nutrients such as iron. Cave bacteria were collected from Long-term parent cultures (LT PC) or Short-term parent cultures (ST PC) inoculated with ferromanganese deposits (FMD) and carbonate secondary minerals from Lechuguilla and Spider caves in Carlsbad Caverns National Park (CCNP), NM. LT PC were incubated for 10-11 years to identify potential chemolithoheterotrophic cultures able to survive in nutrient-limited conditions. ST PC were incubated for 1-3 days to identify a broader diversity of cave isolates. A total of 170 LT and ST cultures,18 pure and 152 mixed, were collected and used to classify siderophore production and type and to identify siderophore producers. Siderophore production was slow to develop (>10 days) in LT cultures with a greater number of weak siderophore producers in comparison to the ST cultures that produced siderophores in <10 days, with a majority of strong siderophore producers. Overall, 64% of the total cultures were siderophore producers, which the majority preferred hydroxamate siderophores. Siderophore producers were classified into Proteobacteria (Alpha-, Beta-, or Gamma-), Actinobacteria, Bacteroidetes, and Firmicutes phyla using 16S rRNA gene sequencing. Our study supports our hypothesis that cave bacteria have the capability to produce siderophores in the subsurface to obtain critical ferric iron.