投影提取垂直分量(PEPC)方法从时间分辨数据中提取动力学。

IF 2.3 2区 物理与天体物理 Q3 CHEMISTRY, PHYSICAL
H Ki, J Gu, Y Cha, K W Lee, H Ihee
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引用次数: 1

摘要

时间分辨x射线液相学(TRXL)是研究液相中化学和生物反应结构动力学的一种有效方法。它能够提取各种动态过程的详细结构方面,中间体的分子结构,以及从小分子到蛋白质和纳米颗粒的各种系统的反应动力学。正确的数据分析是提取TRXL数据中加密的所研究系统的动力学和结构动力学信息的关键。在典型的TRXL数据中,溶质散射、溶剂散射和溶质-溶剂交叉散射信号在q空间中混合,溶质动力学和溶剂流体动力学在时域中混合,使数据分析变得复杂。迄今为止开发的各种方法通常需要事先了解参与反应的候选物种的分子结构。由于这些信息通常是不可获得的,因此典型的数据分析通常涉及繁琐的试验和错误。为了纠正这种情况,我们开发了一种名为投影的方法来提取垂直分量(PEPC),能够从TRXL数据中去除溶剂动力学的影响。所得数据只包含溶质动力学,因此,溶质动力学可以很容易地确定。一旦确定了溶质动力学,随后的数据分析以提取结构信息可以大大提高方便进行。用水中的[Au(CN)2-]3和环己烷中的CHI3两种分子体系的TRXL光化学数据证明了PEPC方法的应用。
本文章由计算机程序翻译,如有差异,请以英文原文为准。

Projection to extract the perpendicular component (PEPC) method for extracting kinetics from time-resolved data.

Projection to extract the perpendicular component (PEPC) method for extracting kinetics from time-resolved data.

Projection to extract the perpendicular component (PEPC) method for extracting kinetics from time-resolved data.

Projection to extract the perpendicular component (PEPC) method for extracting kinetics from time-resolved data.

Time-resolved x-ray liquidography (TRXL) is a potent method for investigating the structural dynamics of chemical and biological reactions in the liquid phase. It has enabled the extraction of detailed structural aspects of various dynamic processes, the molecular structures of intermediates, and kinetics of reactions across a wide range of systems, from small molecules to proteins and nanoparticles. Proper data analysis is key to extracting the information of the kinetics and structural dynamics of the studied system encrypted in the TRXL data. In typical TRXL data, the signals from solute scattering, solvent scattering, and solute-solvent cross scattering are mixed in the q-space, and the solute kinetics and solvent hydrodynamics are mixed in the time domain, thus complicating the data analysis. Various methods developed so far generally require prior knowledge of the molecular structures of candidate species involved in the reaction. Because such information is often unavailable, a typical data analysis often involves tedious trial and error. To remedy this situation, we have developed a method named projection to extract the perpendicular component (PEPC), capable of removing the contribution of solvent kinetics from TRXL data. The resulting data then contain only the solute kinetics, and, thus, the solute kinetics can be easily determined. Once the solute kinetics is determined, the subsequent data analysis to extract the structural information can be performed with drastically improved convenience. The application of the PEPC method is demonstrated with TRXL data from the photochemistry of two molecular systems: [Au(CN)2-]3 in water and CHI3 in cyclohexane.

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来源期刊
Structural Dynamics-Us
Structural Dynamics-Us CHEMISTRY, PHYSICALPHYSICS, ATOMIC, MOLECU-PHYSICS, ATOMIC, MOLECULAR & CHEMICAL
CiteScore
5.50
自引率
3.60%
发文量
24
审稿时长
16 weeks
期刊介绍: Structural Dynamics focuses on the recent developments in experimental and theoretical methods and techniques that allow a visualization of the electronic and geometric structural changes in real time of chemical, biological, and condensed-matter systems. The community of scientists and engineers working on structural dynamics in such diverse systems often use similar instrumentation and methods. The journal welcomes articles dealing with fundamental problems of electronic and structural dynamics that are tackled by new methods, such as: Time-resolved X-ray and electron diffraction and scattering, Coherent diffractive imaging, Time-resolved X-ray spectroscopies (absorption, emission, resonant inelastic scattering, etc.), Time-resolved electron energy loss spectroscopy (EELS) and electron microscopy, Time-resolved photoelectron spectroscopies (UPS, XPS, ARPES, etc.), Multidimensional spectroscopies in the infrared, the visible and the ultraviolet, Nonlinear spectroscopies in the VUV, the soft and the hard X-ray domains, Theory and computational methods and algorithms for the analysis and description of structuraldynamics and their associated experimental signals. These new methods are enabled by new instrumentation, such as: X-ray free electron lasers, which provide flux, coherence, and time resolution, New sources of ultrashort electron pulses, New sources of ultrashort vacuum ultraviolet (VUV) to hard X-ray pulses, such as high-harmonic generation (HHG) sources or plasma-based sources, New sources of ultrashort infrared and terahertz (THz) radiation, New detectors for X-rays and electrons, New sample handling and delivery schemes, New computational capabilities.
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