病毒在无标度网络上的传播再现了在孤立的COVID-19爆发中观察到的冈珀茨生长

Q1 Biochemistry, Genetics and Molecular Biology
Francesco Zonta , Michael Levitt
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引用次数: 3

摘要

在孤立的SARS-CoV-2疫情中,确诊病例和死亡人数在不同大小的地点遵循Gompertz生长函数。缺乏对区域大小的依赖使我们假设病毒的传播取决于社会互动网络的普遍特性。我们通过模拟病毒在不同拓扑结构或连接的网络上的传播来验证这一假设。我们的主要发现是,我们可以在一个无标度网络上用一个简单的病毒传播模型再现在许多早期爆发中观察到的Gompertz增长,在这个网络中,节点的邻居比平均邻居多得多是常见的。有很多邻居的节点在疫情爆发的早期就被感染,然后迅速传播感染。当这些节点不再具有传染性时,拥有大多数邻居的剩余节点接管并继续传播感染。这样,传播速度在一开始是最快的,然后立即减慢。从几何上我们可以看到,疫情的“表面”,即与受感染节点接触的易感节点的数量,在疫情早期和较大节点被感染时开始迅速减少。在我们的模拟中,爆发的速度和影响取决于三个参数:每个节点的平均接触人数、被邻居感染的概率和恢复的概率。减少未来疫情影响的智能干预措施需要侧重于这些关键参数,以尽量减少经济和社会附带损害。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Virus spread on a scale-free network reproduces the Gompertz growth observed in isolated COVID-19 outbreaks

The counts of confirmed cases and deaths in isolated SARS-CoV-2 outbreaks follow the Gompertz growth function for locations of very different sizes. This lack of dependence on region size leads us to hypothesize that virus spread depends on the universal properties of the network of social interactions. We test this hypothesis by simulating the propagation of a virus on networks of different topologies or connectivities. Our main finding is that we can reproduce the Gompertz growth observed for many early outbreaks with a simple virus spread model on a scale-free network, in which nodes with many more neighbors than average are common. Nodes that have very many neighbors are infected early in the outbreak and then spread the infection very rapidly. When these nodes are no longer infectious, the remaining nodes that have most neighbors take over and continue to spread the infection. In this way, the rate of spread is fastest at the very start and slows down immediately. Geometrically we see that the "surface" of the epidemic, the number of susceptible nodes in contact with the infected nodes, starts to rapidly decrease very early in the epidemic and as soon as the larger nodes have been infected. In our simulation, the speed and impact of an outbreak depend on three parameters: the average number of contacts each node makes, the probability of being infected by a neighbor, and the probability of recovery. Intelligent interventions to reduce the impact of future outbreaks need to focus on these critical parameters in order to minimize economic and social collateral damage.

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来源期刊
Advances in biological regulation
Advances in biological regulation Biochemistry, Genetics and Molecular Biology-Molecular Medicine
CiteScore
8.90
自引率
0.00%
发文量
41
审稿时长
17 days
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