稳定随机环境下微生物生长的最佳代谢策略。

IF 2 4区 生物学 Q4 BIOCHEMISTRY & MOLECULAR BIOLOGY
Anna Paola Muntoni, Andrea De Martino
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引用次数: 1

摘要

为了在任何给定的环境中生长,细菌需要收集有关培养基成分的信息,并通过调整其调节和代谢自由度来实施合适的生长策略。在标准意义上,当细菌在培养基中以最快的速度生长时,就实现了最佳策略选择。虽然这种最优性观点非常适合于对周围环境(例如营养水平)有充分了解的细胞,但事物更多地涉及不确定或波动的条件,特别是当变化发生的时间尺度与组织响应所需的时间尺度相当(或更快)时。然而,信息理论为细胞如何在不确定的压力水平下选择最佳的生长策略提供了方法。在这里,我们分析了一个粗粒度的、受实验启发的细菌代谢模型在一个由单一变量(“压力水平”)的(静态)概率密度描述的培养基中生长的理论上最优情景。我们表明,当环境足够复杂和/或当代谢自由度不可能完美调整时(例如由于资源有限),增长率的异质性始终作为最佳反应出现。此外,通过适度的微调,通常可以有效地获得接近无限资源所能达到的结果。换句话说,复杂介质中的异质种群结构相对于探测环境和调整反应速率的可用资源而言可能相当稳健。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Optimal metabolic strategies for microbial growth in stationary random environments.

In order to grow in any given environment, bacteria need to collect information about the medium composition and implement suitable growth strategies by adjusting their regulatory and metabolic degrees of freedom. In the standard sense, optimal strategy selection is achieved when bacteria grow at the fastest rate possible in that medium. While this view of optimality is well suited for cells that have perfect knowledge about their surroundings (e.g. nutrient levels), things are more involved in uncertain or fluctuating conditions, especially when changes occur over timescales comparable to (or faster than) those required to organize a response. Information theory however provides recipes for how cells can choose the optimal growth strategy under uncertainty about the stress levels they will face. Here we analyse the theoretically optimal scenarios for a coarse-grained, experiment-inspired model of bacterial metabolism for growth in a medium described by the (static) probability density of a single variable (the 'stress level'). We show that heterogeneity in growth rates consistently emerges as the optimal response when the environment is sufficiently complex and/or when perfect adjustment of metabolic degrees of freedom is not possible (e.g. due to limited resources). In addition, outcomes close to those achievable with unlimited resources are often attained effectively with a modest amount of fine tuning. In other terms, heterogeneous population structures in complex media may be rather robust with respect to the resources available to probe the environment and adjust reaction rates.

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来源期刊
Physical biology
Physical biology 生物-生物物理
CiteScore
4.20
自引率
0.00%
发文量
50
审稿时长
3 months
期刊介绍: Physical Biology publishes articles in the broad interdisciplinary field bridging biology with the physical sciences and engineering. This journal focuses on research in which quantitative approaches – experimental, theoretical and modeling – lead to new insights into biological systems at all scales of space and time, and all levels of organizational complexity. Physical Biology accepts contributions from a wide range of biological sub-fields, including topics such as: molecular biophysics, including single molecule studies, protein-protein and protein-DNA interactions subcellular structures, organelle dynamics, membranes, protein assemblies, chromosome structure intracellular processes, e.g. cytoskeleton dynamics, cellular transport, cell division systems biology, e.g. signaling, gene regulation and metabolic networks cells and their microenvironment, e.g. cell mechanics and motility, chemotaxis, extracellular matrix, biofilms cell-material interactions, e.g. biointerfaces, electrical stimulation and sensing, endocytosis cell-cell interactions, cell aggregates, organoids, tissues and organs developmental dynamics, including pattern formation and morphogenesis physical and evolutionary aspects of disease, e.g. cancer progression, amyloid formation neuronal systems, including information processing by networks, memory and learning population dynamics, ecology, and evolution collective action and emergence of collective phenomena.
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