用不确定性sci量化心脏模拟中的不确定性。

Lindsay C Rupp, Zexin Liu, Jake A Bergquist, Sumientra Rampersad, Dan White, Jess D Tate, Dana H Brooks, Akil Narayan, Rob S MacLeod
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引用次数: 9

摘要

心脏模拟在表现生理过程方面变得越来越准确。然而,模拟常常不能捕捉到预测中参数不确定性的影响。不确定性量化(UQ)是一组捕捉基于模型假设的模拟输出变异性的技术。尽管存在许多UQ方法,但实际实现可能具有挑战性。我们创建了ununcertainty sci,这是一个UQ框架,它使用多项式混沌(PC)展开来模拟随机变量参数化仿真中的前向随机误差。不确定性sci使用非侵入性方法,简化了对参数空间的探索。结果是一个高效,稳定,准确的PC仿真器,可以分析计算输出统计数据。我们创建了一个Python API来运行undeterminessci,最大限度地减少了引导UQ过程所需的用户输入。我们已经实施了不确定性sci:(1)使用边界元方法量化计算躯干电位对心脏位置不确定性的敏感性,(2)使用有限元方法量化计算躯干电位对生物组织电导率不确定性的敏感性。使用不确定性sci,可以评估模拟参数不确定性的稳健性,并对模型结果的准确性和它们可以提供的临床指导建立现实的期望。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Using UncertainSCI to Quantify Uncertainty in Cardiac Simulations.

Cardiac simulations have become increasingly accurate at representing physiological processes. However, simulations often fail to capture the impact of parameter uncertainty in predictions. Uncertainty quantification (UQ) is a set of techniques that captures variability in simulation output based on model assumptions. Although many UQ methods exist, practical implementation can be challenging. We created UncertainSCI, a UQ framework that uses polynomial chaos (PC) expansion to model the forward stochastic error in simulations parameterized with random variables. UncertainSCI uses non-intrusive methods that parsimoniously explores parameter space. The result is an efficient, stable, and accurate PC emulator that can be analyzed to compute output statistics. We created a Python API to run UncertainSCI, minimizing user inputs needed to guide the UQ process. We have implemented UncertainSCI to: (1) quantify the sensitivity of computed torso potentials using the boundary element method to uncertainty in the heart position, and (2) quantify the sensitivity of computed torso potentials using the finite element method to uncertainty in the conductivities of biological tissues. With UncertainSCI, it is possible to evaluate the robustness of simulations to parameter uncertainty and establish realistic expectations on the accuracy of the model results and the clinical guidance they can provide.

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