SRAS-net:基于深度学习的低分辨率染色体图像分类

IF 1.9 4区 生物学 Q4 CELL BIOLOGY
Xiangbin Liu, Lijun Fu, Jerry Chun-Wei Lin, Shuai Liu
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引用次数: 10

摘要

产前核型诊断对确定胎儿是否有遗传性疾病和某些先天性疾病具有重要意义。染色体分类是核型分析的重要组成部分,其工作繁琐而冗长。基于深度学习的染色体分类方法已经取得了很好的效果,但是如果染色体图像的质量不高,这些方法不能很好地学习图像特征,导致分类结果不理想。而且,现有的方法对性染色体的分类效果一般较差。因此,在本工作中,作者提出使用超分辨率网络——自注意负反馈网络,并将其与传统神经网络相结合,得到一种高效的染色体分类方法SRAS-net。该方法首先将低分辨率的染色体图像输入到超分辨率网络中生成高分辨率的染色体图像,然后使用传统的深度学习模型对染色体进行分类。为了解决性染色体分类不准确的问题,作者还提出使用SMOTE算法生成少量的性染色体样本,以保证样本数量的平衡,同时允许模型学习更多的性染色体特征。实验结果表明,该方法的准确率为97.55%,优于现有方法。
本文章由计算机程序翻译,如有差异,请以英文原文为准。

SRAS-net: Low-resolution chromosome image classification based on deep learning

SRAS-net: Low-resolution chromosome image classification based on deep learning

Prenatal karyotype diagnosis is important to determine if the foetus has genetic diseases and some congenital diseases. Chromosome classification is an important part of karyotype analysis, and the task is tedious and lengthy. Chromosome classification methods based on deep learning have achieved good results, but if the quality of the chromosome image is not high, these methods cannot learn image features well, resulting in unsatisfactory classification results. Moreover, the existing methods generally have a poor effect on sex chromosome classification. Therefore, in this work, the authors propose to use a super-resolution network, Self-Attention Negative Feedback Network, and combine it with traditional neural networks to obtain an efficient chromosome classification method called SRAS-net. The method first inputs the low-resolution chromosome images into the super-resolution network to generate high-resolution chromosome images and then uses the traditional deep learning model to classify the chromosomes. To solve the problem of inaccurate sex chromosome classification, the authors also propose to use the SMOTE algorithm to generate a small number of sex chromosome samples to ensure a balanced number of samples while allowing the model to learn more sex chromosome features. Experimental results show that our method achieves 97.55% accuracy and is better than state-of-the-art methods.

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来源期刊
IET Systems Biology
IET Systems Biology 生物-数学与计算生物学
CiteScore
4.20
自引率
4.30%
发文量
17
审稿时长
>12 weeks
期刊介绍: IET Systems Biology covers intra- and inter-cellular dynamics, using systems- and signal-oriented approaches. Papers that analyse genomic data in order to identify variables and basic relationships between them are considered if the results provide a basis for mathematical modelling and simulation of cellular dynamics. Manuscripts on molecular and cell biological studies are encouraged if the aim is a systems approach to dynamic interactions within and between cells. The scope includes the following topics: Genomics, transcriptomics, proteomics, metabolomics, cells, tissue and the physiome; molecular and cellular interaction, gene, cell and protein function; networks and pathways; metabolism and cell signalling; dynamics, regulation and control; systems, signals, and information; experimental data analysis; mathematical modelling, simulation and theoretical analysis; biological modelling, simulation, prediction and control; methodologies, databases, tools and algorithms for modelling and simulation; modelling, analysis and control of biological networks; synthetic biology and bioengineering based on systems biology.
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