印度孙德邦陆生红树蕨根际宏基因组研究

Sayak Ganguli , Sabdar Rahaman , Abhishek R. Bera , Vineet Vishal , Shelvia Malik , Roopalakshmi K. , Pankaj K. Singh
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引用次数: 11

摘要

本研究报道了陆地红树蕨类植物Acrostichum aureum Linn的根际微生物群分析。来自印度桑德班斯。采用标准方案采集样品,进行16S rRNA基因V3-V4区扩增子测序,鉴定根际微生物群落。共有1,931,252个质量检查读数被组装成204,818个contigs,并使用QIIME进行分析,以揭示变形菌门,酸杆菌门和plantomycetes的丰度。数据可在NCBI -序列读取档案与登录号:SRX2660456。这是关于蕨类植物根际微生物群的首次报道。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Rhizospheric metagenome of the terrestrial mangrove fern Acrostichum from Indian Sunderbans

This study reports the analyses of the rhizospheric microbiome of the terrestrial mangrove fern Acrostichum aureum Linn. from the Indian Sunderbans. Samples were collected using standard protocols and 16S rRNA gene V3–V4 region amplicon sequencing was performed to identify the microbial communities prevalent in the rhizosphere. A total of 1,931,252 quality checked reads were assembled into 204,818 contigs and were analysed using QIIME to reveal the abundance of Proteobacteria, Acidobacteria and Planctomycetes. The data is available at the NCBI - Sequence Read Archive with accession number: SRX2660456. This is the first report of the rhizospheric microbiome belonging to a fern species.

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