Emmanuel Haruna , Noraziah M. Zin , Jonathan M. Adams
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引用次数: 4
摘要
在这里，我们报告了从马来西亚Kebangsaan大学保护区森林中分离出的一种内生tyfis芽孢杆菌菌株的基因组序列草图。基因组大小约为8.04 Mb，该组合包含107个支架，168个contigs, G + C含量为53%。采用16S rRNA基因对菌株SUK123进行系统发育分析，结果表明该菌株属于Paenibacillaceae科，与elgii Paenibacillus SDT的相似性最高(99%)。利用平均核苷酸同源性(ANI)对SUK123与近缘种进行全基因组比较，结果显示SUK123与tyfis类芽孢杆菌Mst1T的相似性为98%，与elgii类芽孢杆菌B69T的相似性为94%，与ehimensis类芽孢杆菌A2T的相似性为91%，与多粘类芽孢杆菌SC2T的相似性为68%，与Paenibacillus alvei DMS29T的相似性为69%。基因组草图保存在欧洲核苷酸档案馆(PRJEB21373)。
Draft genome sequence of an endophytic bacterium, Paenibacillus tyrfis strain SUK123, isolated from Santiria apiculata stem
Here we report the draft genome sequence of an endophytic Paenibacillus tyrfis strain isolated from the Universiti Kebangsaan Malaysia reserve forest, Malaysia. The genome size was approximately 8.04 Mb, and the assembly consisted of 107 scaffolds with 168 contigs, and had a G + C content of 53%. Phylogenetic analysis of strain SUK123 using the 16S rRNA gene revealed that it belonged to the family Paenibacillaceae with the highest similarity to Paenibacillus elgii SDT (99%). Whole genome comparison of SUK123 with related species using average nucleotide identity (ANI) analysis revealed a similarity of 98% to Paenibacillus tyrfis Mst1T, 94% to Paenibacillus elgii B69T, 91% to Paenibacillus ehimensis A2T, 68% to Paenibacillus polymyxa SC2T and 69% to Paenibacillus alvei DMS29T. The draft genome was deposited at the European Nucleotide Archive (PRJEB21373).
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