Jianghao Wu, Ran Gu, Guiming Dong, Guotai Wang, Shaoting Zhang
{"title":"FPL-UDA:基于过滤伪标签的无监督交叉模态自适应前庭神经鞘瘤分割","authors":"Jianghao Wu, Ran Gu, Guiming Dong, Guotai Wang, Shaoting Zhang","doi":"10.1109/ISBI52829.2022.9761706","DOIUrl":null,"url":null,"abstract":"Automatic segmentation of Vestibular Schwannoma (VS) from Magnetic Resonance Imaging (MRI) will help patient management and improve clinical workflow. This paper aims to adapt a model trained with annotated ceT1 images to segment VS from hrT2 images, without annotations of the latter. The proposed method is named as Filtered Pseudo Label-based Unsupervised Domain Adaptation (FPL-UDA) and consists of three components: 1) an image translator converting hrT2 images to pseudo ceT1 images, where a two-stage translation strategy is proposed to deal with images with VS in various sizes, 2) a pseudo label generator trained with ceT1 images to provide pseudo labels for the pseudo ceT1 images, where a GAN-based data augmentation method is proposed to deal with the domain gap between them, and 3) a final segmentor trained with hrT2 images and the corresponding pseudo labels, where an uncertainty-based filtering is used to select high-quality pseudo labels to improve the segmentor’s robustness. Experimental results with a public VS dataset showed that our method achieved an average Dice of 81.52% for VS segmentation from hrT2 images, which outperformed existing unsupervised cross-modality adaptation methods.","PeriodicalId":6827,"journal":{"name":"2022 IEEE 19th International Symposium on Biomedical Imaging (ISBI)","volume":"58 5","pages":"1-5"},"PeriodicalIF":0.0000,"publicationDate":"2022-03-28","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"8","resultStr":"{\"title\":\"FPL-UDA: Filtered Pseudo Label-Based Unsupervised Cross-Modality Adaptation for Vestibular Schwannoma Segmentation\",\"authors\":\"Jianghao Wu, Ran Gu, Guiming Dong, Guotai Wang, Shaoting Zhang\",\"doi\":\"10.1109/ISBI52829.2022.9761706\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"Automatic segmentation of Vestibular Schwannoma (VS) from Magnetic Resonance Imaging (MRI) will help patient management and improve clinical workflow. This paper aims to adapt a model trained with annotated ceT1 images to segment VS from hrT2 images, without annotations of the latter. The proposed method is named as Filtered Pseudo Label-based Unsupervised Domain Adaptation (FPL-UDA) and consists of three components: 1) an image translator converting hrT2 images to pseudo ceT1 images, where a two-stage translation strategy is proposed to deal with images with VS in various sizes, 2) a pseudo label generator trained with ceT1 images to provide pseudo labels for the pseudo ceT1 images, where a GAN-based data augmentation method is proposed to deal with the domain gap between them, and 3) a final segmentor trained with hrT2 images and the corresponding pseudo labels, where an uncertainty-based filtering is used to select high-quality pseudo labels to improve the segmentor’s robustness. Experimental results with a public VS dataset showed that our method achieved an average Dice of 81.52% for VS segmentation from hrT2 images, which outperformed existing unsupervised cross-modality adaptation methods.\",\"PeriodicalId\":6827,\"journal\":{\"name\":\"2022 IEEE 19th International Symposium on Biomedical Imaging (ISBI)\",\"volume\":\"58 5\",\"pages\":\"1-5\"},\"PeriodicalIF\":0.0000,\"publicationDate\":\"2022-03-28\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"8\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"2022 IEEE 19th International Symposium on Biomedical Imaging (ISBI)\",\"FirstCategoryId\":\"1085\",\"ListUrlMain\":\"https://doi.org/10.1109/ISBI52829.2022.9761706\",\"RegionNum\":0,\"RegionCategory\":null,\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"\",\"JCRName\":\"\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"2022 IEEE 19th International Symposium on Biomedical Imaging (ISBI)","FirstCategoryId":"1085","ListUrlMain":"https://doi.org/10.1109/ISBI52829.2022.9761706","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"","JCRName":"","Score":null,"Total":0}
Automatic segmentation of Vestibular Schwannoma (VS) from Magnetic Resonance Imaging (MRI) will help patient management and improve clinical workflow. This paper aims to adapt a model trained with annotated ceT1 images to segment VS from hrT2 images, without annotations of the latter. The proposed method is named as Filtered Pseudo Label-based Unsupervised Domain Adaptation (FPL-UDA) and consists of three components: 1) an image translator converting hrT2 images to pseudo ceT1 images, where a two-stage translation strategy is proposed to deal with images with VS in various sizes, 2) a pseudo label generator trained with ceT1 images to provide pseudo labels for the pseudo ceT1 images, where a GAN-based data augmentation method is proposed to deal with the domain gap between them, and 3) a final segmentor trained with hrT2 images and the corresponding pseudo labels, where an uncertainty-based filtering is used to select high-quality pseudo labels to improve the segmentor’s robustness. Experimental results with a public VS dataset showed that our method achieved an average Dice of 81.52% for VS segmentation from hrT2 images, which outperformed existing unsupervised cross-modality adaptation methods.