使用捕获-再捕获数据对物种之间和物种内部的相互作用进行建模的点过程向量

IF 1.5 3区 环境科学与生态学 Q4 ENVIRONMENTAL SCIENCES
Environmetrics Pub Date : 2022-12-05 DOI:10.1002/env.2781
Alex Diana, Eleni Matechou, Jim E. Griffin, Yadvendradev Jhala, Qamar Qureshi
{"title":"使用捕获-再捕获数据对物种之间和物种内部的相互作用进行建模的点过程向量","authors":"Alex Diana,&nbsp;Eleni Matechou,&nbsp;Jim E. Griffin,&nbsp;Yadvendradev Jhala,&nbsp;Qamar Qureshi","doi":"10.1002/env.2781","DOIUrl":null,"url":null,"abstract":"<p>Capture-recapture (CR) data and corresponding models have been used extensively to estimate the size of wildlife populations when detection probability is less than 1. When the locations of traps or cameras used to capture or detect individuals are known, spatially-explicit CR models are used to infer the spatial pattern of the individual locations and population density. Individual locations, referred to as activity centers (ACs), are defined as the locations around which the individuals move. These ACs are typically assumed to be independent, and their spatial pattern is modeled using homogeneous Poisson processes. However, this assumption is often unrealistic, since individuals can interact with each other, either within a species or between different species. In this article, we consider a vector of point processes from the general class of interaction point processes and develop a model for CR data that can account for interactions, in particular repulsions, between and within multiple species. Interaction point processes present a challenge from an inferential perspective because of the intractability of the normalizing constant of the likelihood function, and hence standard Markov chain Monte Carlo procedures to perform Bayesian inference cannot be applied. Therefore, we adopt an inference procedure based on the Monte Carlo Metropolis Hastings algorithm, which scales well when modeling more than one species. Finally, we adopt an inference method for jointly sampling the latent ACs and the population size based on birth and death processes. This approach also allows us to adaptively tune the proposal distribution of new points, which leads to better mixing especially in the case of non-uniformly distributed traps. We apply the model to a CR data-set on leopards and tigers collected at the Corbett Tiger Reserve in India. Our findings suggest that between species repulsion is stronger than within species, while tiger population density is higher than leopard population density at the park.</p>","PeriodicalId":50512,"journal":{"name":"Environmetrics","volume":"33 8","pages":""},"PeriodicalIF":1.5000,"publicationDate":"2022-12-05","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://onlinelibrary.wiley.com/doi/epdf/10.1002/env.2781","citationCount":"2","resultStr":"{\"title\":\"A vector of point processes for modeling interactions between and within species using capture-recapture data\",\"authors\":\"Alex Diana,&nbsp;Eleni Matechou,&nbsp;Jim E. Griffin,&nbsp;Yadvendradev Jhala,&nbsp;Qamar Qureshi\",\"doi\":\"10.1002/env.2781\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p>Capture-recapture (CR) data and corresponding models have been used extensively to estimate the size of wildlife populations when detection probability is less than 1. When the locations of traps or cameras used to capture or detect individuals are known, spatially-explicit CR models are used to infer the spatial pattern of the individual locations and population density. Individual locations, referred to as activity centers (ACs), are defined as the locations around which the individuals move. These ACs are typically assumed to be independent, and their spatial pattern is modeled using homogeneous Poisson processes. However, this assumption is often unrealistic, since individuals can interact with each other, either within a species or between different species. In this article, we consider a vector of point processes from the general class of interaction point processes and develop a model for CR data that can account for interactions, in particular repulsions, between and within multiple species. Interaction point processes present a challenge from an inferential perspective because of the intractability of the normalizing constant of the likelihood function, and hence standard Markov chain Monte Carlo procedures to perform Bayesian inference cannot be applied. Therefore, we adopt an inference procedure based on the Monte Carlo Metropolis Hastings algorithm, which scales well when modeling more than one species. Finally, we adopt an inference method for jointly sampling the latent ACs and the population size based on birth and death processes. This approach also allows us to adaptively tune the proposal distribution of new points, which leads to better mixing especially in the case of non-uniformly distributed traps. We apply the model to a CR data-set on leopards and tigers collected at the Corbett Tiger Reserve in India. Our findings suggest that between species repulsion is stronger than within species, while tiger population density is higher than leopard population density at the park.</p>\",\"PeriodicalId\":50512,\"journal\":{\"name\":\"Environmetrics\",\"volume\":\"33 8\",\"pages\":\"\"},\"PeriodicalIF\":1.5000,\"publicationDate\":\"2022-12-05\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"https://onlinelibrary.wiley.com/doi/epdf/10.1002/env.2781\",\"citationCount\":\"2\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Environmetrics\",\"FirstCategoryId\":\"93\",\"ListUrlMain\":\"https://onlinelibrary.wiley.com/doi/10.1002/env.2781\",\"RegionNum\":3,\"RegionCategory\":\"环境科学与生态学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q4\",\"JCRName\":\"ENVIRONMENTAL SCIENCES\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Environmetrics","FirstCategoryId":"93","ListUrlMain":"https://onlinelibrary.wiley.com/doi/10.1002/env.2781","RegionNum":3,"RegionCategory":"环境科学与生态学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q4","JCRName":"ENVIRONMENTAL SCIENCES","Score":null,"Total":0}
引用次数: 2

摘要

当发现概率小于1时,捕获-再捕获(CR)数据和相应的模型被广泛用于估计野生动物种群的规模。当用于捕获或探测个体的陷阱或摄像机的位置已知时,使用空间显式CR模型来推断个体位置和种群密度的空间格局。个体位置,称为活动中心(ac),被定义为个体围绕其移动的位置。这些ac通常被认为是独立的,它们的空间格局是使用齐次泊松过程建模的。然而,这种假设通常是不现实的,因为个体可以相互作用,无论是在一个物种内还是在不同物种之间。在本文中,我们考虑了一般相互作用点过程中的点过程向量,并为CR数据开发了一个模型,该模型可以解释多物种之间和内部的相互作用,特别是排斥。交互点过程从推理的角度提出了一个挑战,因为似然函数的归一化常数难以处理,因此不能应用标准的马尔可夫链蒙特卡罗过程来执行贝叶斯推理。因此,我们采用了一种基于蒙特卡洛大都会黑斯廷斯算法的推理程序,该算法在建模多个物种时具有很好的伸缩性。最后,我们采用了一种基于出生和死亡过程的潜在ACs和总体大小联合抽样的推理方法。这种方法还允许我们自适应地调整新点的建议分布,这导致更好的混合,特别是在非均匀分布的陷阱的情况下。我们将该模型应用于印度科贝特老虎保护区收集的豹子和老虎的CR数据集。研究结果表明,物种间的斥力强于物种内的斥力,而老虎种群密度高于猎豹种群密度。
本文章由计算机程序翻译,如有差异,请以英文原文为准。

A vector of point processes for modeling interactions between and within species using capture-recapture data

A vector of point processes for modeling interactions between and within species using capture-recapture data

Capture-recapture (CR) data and corresponding models have been used extensively to estimate the size of wildlife populations when detection probability is less than 1. When the locations of traps or cameras used to capture or detect individuals are known, spatially-explicit CR models are used to infer the spatial pattern of the individual locations and population density. Individual locations, referred to as activity centers (ACs), are defined as the locations around which the individuals move. These ACs are typically assumed to be independent, and their spatial pattern is modeled using homogeneous Poisson processes. However, this assumption is often unrealistic, since individuals can interact with each other, either within a species or between different species. In this article, we consider a vector of point processes from the general class of interaction point processes and develop a model for CR data that can account for interactions, in particular repulsions, between and within multiple species. Interaction point processes present a challenge from an inferential perspective because of the intractability of the normalizing constant of the likelihood function, and hence standard Markov chain Monte Carlo procedures to perform Bayesian inference cannot be applied. Therefore, we adopt an inference procedure based on the Monte Carlo Metropolis Hastings algorithm, which scales well when modeling more than one species. Finally, we adopt an inference method for jointly sampling the latent ACs and the population size based on birth and death processes. This approach also allows us to adaptively tune the proposal distribution of new points, which leads to better mixing especially in the case of non-uniformly distributed traps. We apply the model to a CR data-set on leopards and tigers collected at the Corbett Tiger Reserve in India. Our findings suggest that between species repulsion is stronger than within species, while tiger population density is higher than leopard population density at the park.

求助全文
通过发布文献求助,成功后即可免费获取论文全文。 去求助
来源期刊
Environmetrics
Environmetrics 环境科学-环境科学
CiteScore
2.90
自引率
17.60%
发文量
67
审稿时长
18-36 weeks
期刊介绍: Environmetrics, the official journal of The International Environmetrics Society (TIES), an Association of the International Statistical Institute, is devoted to the dissemination of high-quality quantitative research in the environmental sciences. The journal welcomes pertinent and innovative submissions from quantitative disciplines developing new statistical and mathematical techniques, methods, and theories that solve modern environmental problems. Articles must proffer substantive, new statistical or mathematical advances to answer important scientific questions in the environmental sciences, or must develop novel or enhanced statistical methodology with clear applications to environmental science. New methods should be illustrated with recent environmental data.
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
确定
请完成安全验证×
copy
已复制链接
快去分享给好友吧!
我知道了
右上角分享
点击右上角分享
0
联系我们:info@booksci.cn Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。 Copyright © 2023 布克学术 All rights reserved.
京ICP备2023020795号-1
ghs 京公网安备 11010802042870号
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术官方微信