用基尼指数定量明胶酶谱法中酶的存在。

IF 0.9 4区 生物学 Q4 MATHEMATICAL & COMPUTATIONAL BIOLOGY
Adriana Laura López Lobato, Martha Lorena Avendaño Garrido, Héctor Gabriel Acosta Mesa, Clara Luz Sampieri, Víctor Hugo Sandoval Lozano
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引用次数: 1

摘要

凝胶酶谱测定肿瘤过程中某些酶的活性。这些酶广泛用于医学诊断。为了分析它们,专家们根据它们的调性将酶谱点分为不同的类别。这种分类是通过视觉分析完成的,这使得它成为一个主观的过程。这项工作提出了一种方法来执行这种分类,该方法涉及图像中的无监督学习算法,称为GI算法。通过本文中所示的实验,该方法可以构成生物信息学科学家可以信任的工具,以执行所需的分类,因为它是酶谱图中点酶活性排序的定量指标。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Quantification of the presence of enzymes in gelatin zymography using the Gini index.

Gel zymography quantifies the activity of certain enzymes in tumor processes. These enzymes are widely used in medical diagnosis. In order to analyze them, experts classify the zymography spots into various classes according to their tonalities. This classification is done by visual analysis, which is what makes it a subjective process. This work proposes a methodology to carry out this classifications with a process that involves an unsupervised learning algorithm in the images, denoted as the GI algorithm. With the experiments shown in this paper, this methodology could constitute a tool that bioinformatics scientists can trust to perform the desired classification since it is a quantitative indicator to order the enzymatic activity of the spots in a zymography.

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来源期刊
Journal of Bioinformatics and Computational Biology
Journal of Bioinformatics and Computational Biology MATHEMATICAL & COMPUTATIONAL BIOLOGY-
CiteScore
2.10
自引率
0.00%
发文量
57
期刊介绍: The Journal of Bioinformatics and Computational Biology aims to publish high quality, original research articles, expository tutorial papers and review papers as well as short, critical comments on technical issues associated with the analysis of cellular information. The research papers will be technical presentations of new assertions, discoveries and tools, intended for a narrower specialist community. The tutorials, reviews and critical commentary will be targeted at a broader readership of biologists who are interested in using computers but are not knowledgeable about scientific computing, and equally, computer scientists who have an interest in biology but are not familiar with current thrusts nor the language of biology. Such carefully chosen tutorials and articles should greatly accelerate the rate of entry of these new creative scientists into the field.
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