A. A. Sivtsev, I. Zhalsanova, A. E. Postrigan, E. Fonova, O. Vasilyeva, A. Zarubin, L. I. Minaicheva, A. A. Agafonova, V. V. Petrova, E. Ravzhaeva, O. Salyukova, N. Skryabin
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引用次数: 1
摘要
该研究旨在通过大规模平行测序在托木斯克地区威尔森病患者中寻找ATP7B基因突变。对42例疑似Wilson病患者(年龄1 ~ 33岁)进行分子遗传学分析。通过远程PCR对感兴趣的基因组区域进行富集。连接适配器的DNA文库使用Nextera DNA Flex (Illumina, USA)试剂盒构建。测序在Illumina MiSeq平台(Illumina, USA)上进行。作为这项工作的结果,我们确定了9种致病基因变异。所有的变异都曾在文献中描述过,并在威尔逊氏病患者中发现过。共鉴定出5个错义突变、1个剪接位点突变和3个移码突变。在托木斯克地区的威尔逊氏病患者中,最常见的变异是c.3207C>A,该变异在俄罗斯联邦和其他欧洲人群中最常见。此外,还发现了致病性变种c.3036dupC,这可能是俄罗斯联邦特有的。
Analysis of mutations spectrum in the ATP7B gene in patients with Wilson disease using massively parallel sequencing.
The study aimed to search for mutations in the ATP7B gene using massively parallel sequencing in patients with Wilson disease in the Tomsk region. For 42 patients with suspected Wilson's disease (aged from 1 to 33 years) was performed molecular genetic analysis. Enrichment of the interest genome regions was carried out by the long-range PCR. DNA libraries with ligated adapters were constructed with Nextera DNA Flex (Illumina, USA) kit. Sequencing was performed on the Illumina MiSeq platform (Illumina, USA). As a result of this work, we identified 9 pathogenic genetic variants. All variants were previously described in the literature and were found in patients with Wilson's disease. Five missense mutations, one splice site mutation, and 3 frameshift mutations were identified. In patients with Wilson's disease in the Tomsk region, the most common variant was c.3207C>A, this variant is the most common both in the Russian Federation and in other European populations. Also, a pathogenic variant c.3036dupC was found, which is probably endemic to the Russian Federation.
期刊介绍:
The journal deals with theoretical and practical problems of clinical laboratory diagnosis, publishes editorial articles, reviews of literature, original articles, short reports, discussions, book reviews, current events, materials which may assist the practitioners, methods of laboratory investigations used in medicine, materials on the results of practical application of new methods of investigation in the following fields of clinical laboratory diagnosis: hematology, cytology, coagulation, biochemistry, immunology.