Peter C Searle, Andrea L Kokkonen, Jillian R Campbell, Dennis K Shiozawa, Mark C Belk, R P Evans
{"title":"基于完整线粒体基因组序列的三种石首鱼的系统发育关系：基于完整线粒体基因组序列的三种岩鱼：Sebastesmelanops、Sebastesciliatus 和 Sebastesvariabilis（鲭形目，鲭科）的系统发育关系。","authors":"Peter C Searle, Andrea L Kokkonen, Jillian R Campbell, Dennis K Shiozawa, Mark C Belk, R P Evans","doi":"10.3897/BDJ.11.e98167","DOIUrl":null,"url":null,"abstract":"<p><p>We characterise the complete mitochondrial genomes (mitogenomes) of Black rockfish (<i>Sebastesmelanops</i> Girard, 1856; n = 1), Dark rockfish (<i>Sebastesciliatus</i> Tilesius, 1813; n = 2) and Dusky rockfish (<i>Sebastesvariabilis</i> Pallas, 1814; n = 2). The lengths of the mitogenomes are 16,405 bp for <i>S.melanops</i>, 16,400 bp for both <i>S.ciliatus</i> and 16,400 and 16,401 bp for <i>S.variabilis</i>. We examine these species' phylogenetic relationships using 35 previously published rockfish mitogenomes, representing 27 species. We find that <i>S.melanops</i> is sister to a clade consisting of <i>S.rubrivinctus</i>, <i>S.nigrocinctus</i>, <i>S.umbrosus</i> and <i>S.oculatus</i>, whereas <i>S.ciliatus</i> and <i>S.variabilis</i> are sister to a clade consisting of <i>S.norvegicus</i>, <i>S.viviparus</i>, <i>S.mentella</i> and <i>S.fasciatus</i>. We were unable to separate <i>S.ciliatus</i> and <i>S.variabilis</i> using their complete mitogenomes.</p>","PeriodicalId":12624,"journal":{"name":"Geofisica Internacional","volume":"1 1","pages":"e98167"},"PeriodicalIF":0.5000,"publicationDate":"2023-02-28","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10848789/pdf/","citationCount":"0","resultStr":"{\"title\":\"Phylogenetic relationships of three rockfish: <i>Sebastesmelanops</i>, <i>Sebastesciliatus</i> and <i>Sebastesvariabilis</i> (Scorpaeniformes, Scorpaenidae) based on complete mitochondrial genome sequences.\",\"authors\":\"Peter C Searle, Andrea L Kokkonen, Jillian R Campbell, Dennis K Shiozawa, Mark C Belk, R P Evans\",\"doi\":\"10.3897/BDJ.11.e98167\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p><p>We characterise the complete mitochondrial genomes (mitogenomes) of Black rockfish (<i>Sebastesmelanops</i> Girard, 1856; n = 1), Dark rockfish (<i>Sebastesciliatus</i> Tilesius, 1813; n = 2) and Dusky rockfish (<i>Sebastesvariabilis</i> Pallas, 1814; n = 2). The lengths of the mitogenomes are 16,405 bp for <i>S.melanops</i>, 16,400 bp for both <i>S.ciliatus</i> and 16,400 and 16,401 bp for <i>S.variabilis</i>. We examine these species' phylogenetic relationships using 35 previously published rockfish mitogenomes, representing 27 species. We find that <i>S.melanops</i> is sister to a clade consisting of <i>S.rubrivinctus</i>, <i>S.nigrocinctus</i>, <i>S.umbrosus</i> and <i>S.oculatus</i>, whereas <i>S.ciliatus</i> and <i>S.variabilis</i> are sister to a clade consisting of <i>S.norvegicus</i>, <i>S.viviparus</i>, <i>S.mentella</i> and <i>S.fasciatus</i>. We were unable to separate <i>S.ciliatus</i> and <i>S.variabilis</i> using their complete mitogenomes.</p>\",\"PeriodicalId\":12624,\"journal\":{\"name\":\"Geofisica Internacional\",\"volume\":\"1 1\",\"pages\":\"e98167\"},\"PeriodicalIF\":0.5000,\"publicationDate\":\"2023-02-28\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10848789/pdf/\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Geofisica Internacional\",\"FirstCategoryId\":\"93\",\"ListUrlMain\":\"https://doi.org/10.3897/BDJ.11.e98167\",\"RegionNum\":4,\"RegionCategory\":\"地球科学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"2023/1/1 0:00:00\",\"PubModel\":\"eCollection\",\"JCR\":\"Q4\",\"JCRName\":\"GEOCHEMISTRY & GEOPHYSICS\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Geofisica Internacional","FirstCategoryId":"93","ListUrlMain":"https://doi.org/10.3897/BDJ.11.e98167","RegionNum":4,"RegionCategory":"地球科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"2023/1/1 0:00:00","PubModel":"eCollection","JCR":"Q4","JCRName":"GEOCHEMISTRY & GEOPHYSICS","Score":null,"Total":0}
Phylogenetic relationships of three rockfish: Sebastesmelanops, Sebastesciliatus and Sebastesvariabilis (Scorpaeniformes, Scorpaenidae) based on complete mitochondrial genome sequences.
We characterise the complete mitochondrial genomes (mitogenomes) of Black rockfish (Sebastesmelanops Girard, 1856; n = 1), Dark rockfish (Sebastesciliatus Tilesius, 1813; n = 2) and Dusky rockfish (Sebastesvariabilis Pallas, 1814; n = 2). The lengths of the mitogenomes are 16,405 bp for S.melanops, 16,400 bp for both S.ciliatus and 16,400 and 16,401 bp for S.variabilis. We examine these species' phylogenetic relationships using 35 previously published rockfish mitogenomes, representing 27 species. We find that S.melanops is sister to a clade consisting of S.rubrivinctus, S.nigrocinctus, S.umbrosus and S.oculatus, whereas S.ciliatus and S.variabilis are sister to a clade consisting of S.norvegicus, S.viviparus, S.mentella and S.fasciatus. We were unable to separate S.ciliatus and S.variabilis using their complete mitogenomes.
期刊介绍：
Geofísica internacional is a quarterly scientific journal that publishes original papers that contain topics that are interesting for the geophysical community. The journal publishes research and review articles, brief notes and reviews books about seismology, volcanology, spacial sciences, hydrology and exploration, paleomagnetism and tectonic, and physical oceanography.
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