基于b细胞表位的寨卡病毒肽疫苗的芯片设计

Firasti AN Sumadi, Annisa ZS Ariadne, A. Jamil, M. A. Muchlisin, Hidajah Rachmawati
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摘要

寨卡病毒通过伊蚊传播,人类作为宿主,因此备受医学界的关注。该病影响胎儿发育,并在孕妇中引起严重的神经发育障碍,如吉兰-巴雷综合征(GBS)和先天性寨卡综合征(CZS),包括先天性小头畸形和胎儿死亡。因此,预防需要疫苗。基于表位的肽疫苗在选择性和安全性方面都具有优势。使用计算方法是开发疫苗的一种成本效益高的方法。本研究的目的是观察各国获得的寨卡病毒E蛋白序列的保守区域和系统发育树,利用in-silico方法了解寨卡病毒E蛋白序列最具免疫原性的表位通知,了解最具免疫原性的蛋白序列表位的潜力。兹卡病毒作为候选疫苗通过在硅片上使用。本研究采用了一项描述性观察性研究,使用计算机工具对寨卡病毒肽候选疫苗进行了研究。使用的软件和网站有MEGA-X, IEDB, VaxiJen 2.0, BLASTp NCBI。从收集到的41个候选表位序列中,有3个候选表位具有抗原性,并通过了相似性试验,具有开发肽疫苗的潜力;SLGLDCE, etdenrakvevnspraelg和AHAKRQ。关键词:疫苗,肽,表位,寨卡病毒,计算机
本文章由计算机程序翻译,如有差异,请以英文原文为准。
IN SILICO DESIGN OF B-CELL EPITOPE BASED PEPTIDE VACCINE FOR ZIKA VIRUS
Zika virus infection attracted the attention of the medical community since it is transmitted by the Aedes mosquito and humans act as hosts. The disease affects fetal development and causes severe neurodevelopmental disorders, such as GBS (Guillain-Barre Syndrome), and CZS (Congenital Zika Syndrome) in pregnant women, including congenital microcephaly, and fetal death. Therefore, a vaccine is needed for prevention. Epitope-based peptide vaccines have advantages in terms of both selectivity and safety. The use of computational methods is a cost-efficient way of developing vaccines. This research aims to look at conserved areas and see the phylogenetic tree of the zika virus E protein sequences obtained from various countries, to see the most immunogenic epitope notifications of the ZIKV E protein sequence using the in-silico method, to see the potential for the most immunogenic epitopes of protein sequences. Zika virus as a vaccine candidate through the use of in silico. This study was using a descriptive observational study using in-silico tools for Zika virus peptide vaccine candidates. Some software and websites that were used are MEGA-X, IEDB, VaxiJen 2.0, BLASTp NCBI. From the 41 sequences that have been collected, 3 epitope candidates had antigenic properties and also passed the similarity test so the potential to develop a peptide vaccine; SLGLDCE, ETDENRAKVEVTPNSPRAEATLG, and AHAKRQ.  Keywords: Vaccine, Peptide, Epitope, Zika Virus, In Silico
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