利用PyCOMPSs加强大气尘埃预报

Javier Conejero, Cristian Ramon-Cortes, K. Serradell, Rosa M. Badia
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引用次数: 4

摘要

基于任务的编程正在成为推动高性能计算(HPC)和大数据应用的重要工具。特别是COMP超标量(comps),在高性能计算环境下的分布式大数据应用中是一种有效的基于任务的编程模型。像NMMB-MONARCH这样的应用程序,它是一个由一组步骤组成的灰尘预测应用程序(其中一些是带有或不带有MPI的二进制文件),是pycomps的完美候选者,pycomps是comps的Python绑定。本文描述了将NMMB-MONARCH在线多尺度大气尘埃模型应用于PyCOMPSs的成功案例,以最小的开发人员努力利用其固有的并行性。本文还包括在Nord3超级计算机上对该实现的评估,可扩展性分析和深入的行为研究。本文的主要成果有:(1)PyCOMPSs能够从NMMB-MONARCH应用中提取并行性;(2)与以前的版本相比,它能够在性能方面提高粉尘预测;(3)PyCOMPSs能够与MPI应用程序交互并共享资源,当它作为任务包含在工作流中。最后,我们提出了将这些经验的知识导出到其他应用程序的关键,以便从使用pycomps中受益。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Boosting Atmospheric Dust Forecast with PyCOMPSs
Task-based programming is becoming a tool of large interest for boosting High-Performance Computing (HPC) and Big Data applications. In particular, COMP Superscalar (COMPSs), is showing to be an effective task-based programming model for distributed computing of Big Data applications within HPC environments. Applications like NMMB-MONARCH, which is a dust forecast application composed by a set of steps (being some of them binaries with or without MPI), are perfect candidates for PyCOMPSs, the Python binding of COMPSs. This paper describes the success story of the adaptation of the NMMB-MONARCH online multi-scale atmospheric dust model to PyCOMPSs in order to exploit its inherent parallelism with the minimal developer effort. The paper also includes an evaluation of this implementation in the Nord3 supercomputer, a scalability analysis and an in-depth behaviour study. The main results presented in this paper are: (1) PyCOMPSs is able to extract the parallelism from the NMMB-MONARCH application; (2) it is able to improve the dust forecasting in terms of performance when compared with previous versions, and (3) PyCOMPSs is able to interact and share the resources with MPI applications when included in the workflow as tasks. Finally, we present the keys for exporting the knowledge of this experience to other applications in order to benefit from using PyCOMPSs.
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