扩展种群动态范围内细菌传播的建模

Q3 Mathematics
Y. Shuai, A. Maslovskaya, C. Kuttler
{"title":"扩展种群动态范围内细菌传播的建模","authors":"Y. Shuai, A. Maslovskaya, C. Kuttler","doi":"10.17537/2023.18.89","DOIUrl":null,"url":null,"abstract":"\n”Quorum sensing” as a special kind of communication in bacterial populations can be analyzed by means of methods and techniques of mathematical modeling and computer simulation. In the present study, a modification of a deterministic mathematical model of bacterial quorum sensing is proposed, taking into account the law of multiphase population dynamics. The mathematical model is formalized by an initial-boundary value problem for a system of semilinear reaction-diffusion partial differential equations. The equations include generation terms in view of changes in the biomass density. The model describes space-time dynamics of concentrations of special substances (signaling agents and Lactonase enzymes) that characterize the quorum sensing in Gram-negative bacteria. The problem is solved by means of the finite element method using the COMSOL Multiphysics platform. Computational experiments are performed to estimate concentrations of key substances characterizing quorum sensing for Pseudomonas putida bacterial strains in an expanded range of population dynamics.\n","PeriodicalId":53525,"journal":{"name":"Mathematical Biology and Bioinformatics","volume":"8 1","pages":""},"PeriodicalIF":0.0000,"publicationDate":"2023-03-29","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"1","resultStr":"{\"title\":\"Modeling of Bacterial Communication in the Extended Range of Population Dynamics\",\"authors\":\"Y. Shuai, A. Maslovskaya, C. Kuttler\",\"doi\":\"10.17537/2023.18.89\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"\\n”Quorum sensing” as a special kind of communication in bacterial populations can be analyzed by means of methods and techniques of mathematical modeling and computer simulation. In the present study, a modification of a deterministic mathematical model of bacterial quorum sensing is proposed, taking into account the law of multiphase population dynamics. The mathematical model is formalized by an initial-boundary value problem for a system of semilinear reaction-diffusion partial differential equations. The equations include generation terms in view of changes in the biomass density. The model describes space-time dynamics of concentrations of special substances (signaling agents and Lactonase enzymes) that characterize the quorum sensing in Gram-negative bacteria. The problem is solved by means of the finite element method using the COMSOL Multiphysics platform. Computational experiments are performed to estimate concentrations of key substances characterizing quorum sensing for Pseudomonas putida bacterial strains in an expanded range of population dynamics.\\n\",\"PeriodicalId\":53525,\"journal\":{\"name\":\"Mathematical Biology and Bioinformatics\",\"volume\":\"8 1\",\"pages\":\"\"},\"PeriodicalIF\":0.0000,\"publicationDate\":\"2023-03-29\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"1\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Mathematical Biology and Bioinformatics\",\"FirstCategoryId\":\"1085\",\"ListUrlMain\":\"https://doi.org/10.17537/2023.18.89\",\"RegionNum\":0,\"RegionCategory\":null,\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q3\",\"JCRName\":\"Mathematics\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Mathematical Biology and Bioinformatics","FirstCategoryId":"1085","ListUrlMain":"https://doi.org/10.17537/2023.18.89","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q3","JCRName":"Mathematics","Score":null,"Total":0}
引用次数: 1

摘要

“群体感应”作为细菌群体中一种特殊的交流方式,可以用数学建模和计算机模拟的方法和技术进行分析。在本研究中,提出了一种修正的确定性数学模型的细菌群体感应,考虑到多相种群动态规律。用半线性反应扩散偏微分方程组的初边值问题形式化了数学模型。考虑到生物量密度的变化,方程中包括了生成项。该模型描述了表征革兰氏阴性菌群体感应的特殊物质(信号剂和内酯酶)浓度的时空动力学。利用COMSOL多物理场平台,采用有限元方法解决了这一问题。计算实验进行估计的关键物质的浓度特征的群体感应的恶臭假单胞菌菌株在扩大范围内的种群动态。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Modeling of Bacterial Communication in the Extended Range of Population Dynamics
”Quorum sensing” as a special kind of communication in bacterial populations can be analyzed by means of methods and techniques of mathematical modeling and computer simulation. In the present study, a modification of a deterministic mathematical model of bacterial quorum sensing is proposed, taking into account the law of multiphase population dynamics. The mathematical model is formalized by an initial-boundary value problem for a system of semilinear reaction-diffusion partial differential equations. The equations include generation terms in view of changes in the biomass density. The model describes space-time dynamics of concentrations of special substances (signaling agents and Lactonase enzymes) that characterize the quorum sensing in Gram-negative bacteria. The problem is solved by means of the finite element method using the COMSOL Multiphysics platform. Computational experiments are performed to estimate concentrations of key substances characterizing quorum sensing for Pseudomonas putida bacterial strains in an expanded range of population dynamics.
求助全文
通过发布文献求助,成功后即可免费获取论文全文。 去求助
来源期刊
Mathematical Biology and Bioinformatics
Mathematical Biology and Bioinformatics Mathematics-Applied Mathematics
CiteScore
1.10
自引率
0.00%
发文量
13
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
确定
请完成安全验证×
copy
已复制链接
快去分享给好友吧!
我知道了
右上角分享
点击右上角分享
0
联系我们:info@booksci.cn Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。 Copyright © 2023 布克学术 All rights reserved.
京ICP备2023020795号-1
ghs 京公网安备 11010802042870号
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术官方微信